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Description of Rhodobacter flavimaris sp. nov. and proposal of the genera Paenirhodobacter , Sedimentimonas , and Sinirhodobacter as synonyms of Rhodobacter .
- Source :
-
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2024 Oct; Vol. 74 (10). - Publication Year :
- 2024
-
Abstract
- Two Gram-stain-negative, aerobic, ovoid to short rod-shaped bacterial strains, designated as WL0062 <superscript>T</superscript> and WL0115, were isolated from coastal zone of the Yellow Sea, Jiangsu Province, PR China, respectively. Strain WL0062 <superscript>T</superscript> grew optimally at 28 °C, pH 7.0-8.0 and with 1.0-3.0% (w/v) NaCl. Strain WL0115 grew optimally at 28 °C, pH 6.0-7.0 and with 1.0-3.0% (w/v) NaCl. In the bac120 tree, strains WL0062 <superscript>T</superscript> and WL0115 clustered together with Sedimentimonas flavescens B57 <superscript>T</superscript> . The respiratory quinone of both strains was ubiquinone-10. The major polar lipids of both strains were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, glycolipid, phosphatidylmonomethylethanolamine, and one unidentified polar lipid. The major fatty acids of strain WL0062 <superscript>T</superscript> were summed features 8 (C <subscript>18 : 1</subscript> ω 6 c and/or C <subscript>18 : 1</subscript> ω 7 c ). The major fatty acids of strain WL0115 were summed features 8 (C <subscript>18 : 1</subscript> ω 6 c and/or C <subscript>18 : 1</subscript> ω 7 c ), C <subscript>18 : 0</subscript> , iso-C <subscript>17 : 1</subscript> ω 5 c and C <subscript>20 : 4</subscript> ω 6/9/12/15 c (arachidonic acid). The G+C content of genomic DNA of strains WL0062 <superscript>T</superscript> and WL0115 was 64.0 mol% in both of them. Combined with the analysis of average nucleotide identity, average amino acid identity, and digital DNA-DNA hybridization, strain WL0062 <superscript>T</superscript> represents a novel species of the genus Rhodobacter , for which the name Rhodobacter flavimaris sp. nov is proposed. The type strain is WL0062 <superscript>T</superscript> (=MCCC 1K06014 <superscript>T</superscript> =JCM 34676 <superscript>T</superscript> =GDMCC 1.2427 <superscript>T</superscript> ). Strain WL0115 (=MCCC 1K07531=JCM 35568=GDMCC 1.3088) should belong to the same species as Sedimentimonas flavescens B57 <superscript>T</superscript> . In addition, on the basis of phylogenomic relationship and phenotypical characteristics, the genera Paenirhodobacter , Sedimentimonas , and Sinirhodobacter are proposed as synonyms of Rhodobacter .
- Subjects :
- China
Rhodobacter genetics
Rhodobacter classification
Rhodobacter isolation & purification
Nucleic Acid Hybridization
Phospholipids chemistry
Base Composition
Fatty Acids chemistry
Phylogeny
Bacterial Typing Techniques
DNA, Bacterial genetics
Ubiquinone
RNA, Ribosomal, 16S genetics
Sequence Analysis, DNA
Seawater microbiology
Subjects
Details
- Language :
- English
- ISSN :
- 1466-5034
- Volume :
- 74
- Issue :
- 10
- Database :
- MEDLINE
- Journal :
- International journal of systematic and evolutionary microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 39365647
- Full Text :
- https://doi.org/10.1099/ijsem.0.006540