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Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days.

Authors :
Nunn BL
Timmins-Schiffman E
Mudge MC
Plubell DL
Chebli G
Kubanek J
Riffle M
Noble WS
Harvey E
Nunn TA
Huntemann M
Clum A
Foster B
Foster B
Roux S
Palaniappan K
Mukherjee S
Reddy TBK
Daum C
Copeland A
Chen IA
Ivanova NN
Kyrpides NC
Glavina Del Rio T
Eloe-Fadrosh EA
Source :
Scientific data [Sci Data] 2024 Nov 22; Vol. 11 (1), pp. 1270. Date of Electronic Publication: 2024 Nov 22.
Publication Year :
2024

Abstract

In May and June of 2021, marine microbial samples were collected for DNA sequencing in East Sound, WA, USA every 4 hours for 22 days. This high temporal resolution sampling effort captured the last 3 days of a Rhizosolenia sp. bloom, the initiation and complete bloom cycle of Chaetoceros socialis (8 days), and the following bacterial bloom (2 days). Metagenomes were completed on the time series, and the dataset includes 128 size-fractionated microbial samples (0.22-1.2 µm), providing gene abundances for the dominant members of bacteria, archaea, and viruses. This dataset also has time-matched nutrient analyses, flow cytometry data, and physical parameters of the environment at a single point of sampling within a coastal ecosystem that experiences regular bloom events, facilitating a range of modeling efforts that can be leveraged to understand microbial community structure and their influences on the growth, maintenance, and senescence of phytoplankton blooms.<br />Competing Interests: Competing interests: The authors declare no competing interests.<br /> (© 2024. The Author(s).)

Details

Language :
English
ISSN :
2052-4463
Volume :
11
Issue :
1
Database :
MEDLINE
Journal :
Scientific data
Publication Type :
Academic Journal
Accession number :
39578464
Full Text :
https://doi.org/10.1038/s41597-024-04013-5