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Estimation of multicomponent reactions' yields from networks of mechanistic steps.

Authors :
Szymkuć S
Wołos A
Roszak R
Grzybowski BA
Source :
Nature communications [Nat Commun] 2024 Nov 27; Vol. 15 (1), pp. 10286. Date of Electronic Publication: 2024 Nov 27.
Publication Year :
2024

Abstract

This work describes estimation of yields of complex, multicomponent reactions (MCRs) based on the modeled networks of mechanistic steps spanning both the main reaction pathway as well as immediate and downstream side reactions. Because experimental values of the kinetic rate constants for individual mechanistic transforms are extremely sparse, these constants are approximated here using Mayr's nucleophilicity and electrophilicity parameters fine-tuned by correction terms grounded in linear free-energy relationships. With this formalism, the model trained on the mechanistic networks of only 20 - but mechanistically- and yield-diverse MCRs - transfers well to newly discovered MCRs that are based on markedly different mechanisms and types of individual mechanistic transforms. These results suggest that mechanistic-level approach to yield estimation may be a useful alternative to models that are derived from full-reaction data and lack information about yield-lowering side reactions.<br />Competing Interests: Competing interests: The authors declare the following competing interests: S.S., A.W., R.R., and B.A.G. are consultants and/or stakeholders of Allchemy, Inc. Allchemy software and its MECH module is property of Allchemy, Inc. USA. All queries about access options to Allchemy, including academic collaborations, should be sent to saraszymkuc@allchemy.net.<br /> (© 2024. The Author(s).)

Details

Language :
English
ISSN :
2041-1723
Volume :
15
Issue :
1
Database :
MEDLINE
Journal :
Nature communications
Publication Type :
Academic Journal
Accession number :
39604372
Full Text :
https://doi.org/10.1038/s41467-024-54550-1