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MOCAT2: a metagenomic assembly, annotation and profiling framework.

Authors :
Kultima, Jens Roat
Coelho, Luis Pedro
Forslund, Kristoffer
Huerta-Cepas, Jaime
Li, Simone S.
Driessen, Marja
Voigt, Anita Yvonne
Zeller, Georg
Sunagawa, Shinichi
Bork, Peer
Source :
Bioinformatics; 8/15/2016, Vol. 32 Issue 16, p2520-2523, 4p
Publication Year :
2016

Abstract

Summary: MOCAT2 is a software pipeline for metagenomic sequence assembly and gene prediction with novel features for taxonomic and functional abundance profiling. The automated generation and efficient annotation of non-redundant reference catalogs by propagating pre-computed assignments from 18 databases covering various functional categories allows for fast and comprehensive functional characterization of metagenomes. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
13674803
Volume :
32
Issue :
16
Database :
Complementary Index
Journal :
Bioinformatics
Publication Type :
Academic Journal
Accession number :
117386772
Full Text :
https://doi.org/10.1093/bioinformatics/btw183