High-throughput analysis of the human thymic Vδ1+ T cell receptor repertoire.

γδ T cells are a relatively rare subset of lymphocytes in the human peripheral blood, but they play important roles at the interface between the innate and the adaptive immune systems. The γδ T cell lineage is characterized by a signature γδ T cell receptor (γδTCR) that displays extensive sequence variability originated by DNA rearrangement of the corresponding V(D)J loci. Human γδ T cells comprise Vγ9Vδ2 T cells, the major subset in the peripheral blood; and Vδ1⁺ T cells, the predominant subpopulation in the post-natal thymus and in peripheral tissues. While less studied, Vδ1⁺ T cells recently gathered significant attention due to their anti-cancer and anti-viral activities. In this study we applied next-generation sequencing (NGS) to analyse the γδTCR repertoire of highly (FACS-)purified Vδ1⁺ T cells from human thymic biopsies. Our analysis reveals unsuspected aspects of thymically rearranged and expressed (at the mRNA level) TRG and TRD genes, thus constituting a data resource that qualifies previous conclusions on the TCR repertoire of γδ T cells developing in the human thymus. Design Type(s) transcription profiling design • cellular data analysis objective Measurement Type(s) gamma delta T-lymphocyte Technology Type(s) RNA sequencing Factor Type(s) sex • gene Sample Characteristic(s) Homo sapiens • thymus Machine-accessible metadata file describing the reported data (ISA-Tab format) [ABSTRACT FROM AUTHOR]