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Tumor Characterization in Breast Cancer Identifies Immune-Relevant Gene Signatures Associated With Prognosis.

Authors :
Li, Jie
Liu, Cun
Chen, Yi
Gao, Chundi
Wang, Miyuan
Ma, Xiaoran
Zhang, Wenfeng
Zhuang, Jing
Yao, Yan
Sun, Changgang
Source :
Frontiers in Genetics; 11/12/2019, Vol. 10, p1-10, 10p
Publication Year :
2019

Abstract

There has been increasing attention on immune-oncology for its impressive clinical benefits in many different malignancies. However, due to molecular and genetic heterogeneity of tumors, the activities of traditional clinical and pathological criteria are far from satisfactory. Immune-based strategies have re-ignited hopes for the treatment and prevention of breast cancer. Prognostic or predictive biomarkers, associated with tumor immune microenvironment, may have great prospects in guiding patient management, identifying new immune-related molecular markers, establishing personalized risk assessment of breast cancer. Therefore, in this study, weighted gene co-expression network analysis (WGCNA), single-sample gene set enrichment analysis (ssGSEA), multivariate COX analysis, least absolute shrinkage, and selection operator (LASSO), and support vector machine-recursive feature elimination (SVM-RFE) algorithm, along with a series of analyses were performed, and four immune-related genes (APOD , CXCL14 , IL33 , and LIFR) were identified as biomarkers correlated with breast cancer prognosis. The findings may provide different insights into prognostic monitoring of immune-related targets for breast cancer or can be served as reference for the further research and validation of biomarkers. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
16648021
Volume :
10
Database :
Complementary Index
Journal :
Frontiers in Genetics
Publication Type :
Academic Journal
Accession number :
139624625
Full Text :
https://doi.org/10.3389/fgene.2019.01119