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A novel risk signature that combines 10 long noncoding RNAs to predict neuroblastoma prognosis.

Authors :
Gao, Li
Lin, Peng
Chen, Peng
Gao, Rui‐Zhi
Yang, Hong
He, Yun
Chen, Jia‐Bo
Luo, Yi‐Ge
Xu, Qiong‐Qian
Liang, Song‐Wu
Gu, Jin‐Han
Huang, Zhi‐Guang
Dang, Yi‐Wu
Chen, Gang
Source :
Journal of Cellular Physiology; Apr2020, Vol. 235 Issue 4, p3823-3834, 12p
Publication Year :
2020

Abstract

Neuroblastoma (NBL) is the most frequently encountered extracranial solid neoplasm and impacts significantly on the survival of patients, especially in cases of advanced tumor stage or relapse. A long noncoding RNA (lncRNA) signature to predict the survival of patients with NBL is proposed in this paper. Differentially expressed lncRNA (DElncRNA) was selected using the Limma plus Voom package in R based on the RNA‐sequencing data downloaded from the Therapeutically Applicable Research To Generate Effective Treatments database and Genotype‐Tissue Expression database. Univariate cox regression analysis, least absolute shrinkage and selection operator regression analysis, and multivariate cox regression analysis were conducted to identify candidate DElncRNAs for the risk signature. Consequently, 10 DElncRNAs were designated as candidate DElncRNAs for the risk signature. Time‐dependent receiver operating characteristic curves and Kapan–Meier survival curves confirmed the efficacy of the risk signature in predicting the survival of patients with NBL (area under the curve = 0.941; p ≤.001). One of the DElncRNA constituent subparts (LINC01010) was significantly associated with the survival outcome of patients with NBL in GSE62564 (p =.004). Thus, a risk signature comprising 10 DElncRNAs was identified as effective for individual risk stratification and the survival prediction outcomes of patients with NBL. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
00219541
Volume :
235
Issue :
4
Database :
Complementary Index
Journal :
Journal of Cellular Physiology
Publication Type :
Academic Journal
Accession number :
141077358
Full Text :
https://doi.org/10.1002/jcp.29277