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ExaHDF5: Delivering Efficient Parallel I/O on Exascale Computing Systems.

Authors :
Byna, Suren
Breitenfeld, M. Scot
Dong, Bin
Koziol, Quincey
Pourmal, Elena
Robinson, Dana
Soumagne, Jerome
Tang, Houjun
Vishwanath, Venkatram
Warren, Richard
Source :
Journal of Computer Science & Technology (10009000); Jan2020, Vol. 35 Issue 1, p145-160, 16p
Publication Year :
2020

Abstract

Scientific applications at exascale generate and analyze massive amounts of data. A critical requirement of these applications is the capability to access and manage this data efficiently on exascale systems. Parallel I/O, the key technology enables moving data between compute nodes and storage, faces monumental challenges from new applications, memory, and storage architectures considered in the designs of exascale systems. As the storage hierarchy is expanding to include node-local persistent memory, burst buffers, etc., as well as disk-based storage, data movement among these layers must be efficient. Parallel I/O libraries of the future should be capable of handling file sizes of many terabytes and beyond. In this paper, we describe new capabilities we have developed in Hierarchical Data Format version 5 (HDF5), the most popular parallel I/O library for scientific applications. HDF5 is one of the most used libraries at the leadership computing facilities for performing parallel I/O on existing HPC systems. The state-of-the-art features we describe include: Virtual Object Layer (VOL), Data Elevator, asynchronous I/O, full-featured single-writer and multiple-reader (Full SWMR), and parallel querying. In this paper, we introduce these features, their implementations, and the performance and feature benefits to applications and other libraries. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
10009000
Volume :
35
Issue :
1
Database :
Complementary Index
Journal :
Journal of Computer Science & Technology (10009000)
Publication Type :
Academic Journal
Accession number :
141432932
Full Text :
https://doi.org/10.1007/s11390-020-9822-9