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Multi-omics characterization and validation of invasiveness-related molecular features across multiple cancer types.

Authors :
Bi, Guoshu
Liang, Jiaqi
Zheng, Yuansheng
Li, Runmei
Zhao, Mengnan
Huang, Yiwei
Zhan, Cheng
Xu, Songtao
Fan, Hong
Source :
Journal of Translational Medicine; 3/25/2021, Vol. 19 Issue 1, p1-17, 17p
Publication Year :
2021

Abstract

<bold>Background: </bold>Tumor invasiveness reflects many biological changes associated with tumorigenesis, progression, metastasis, and drug resistance. Therefore, we performed a systematic assessment of invasiveness-related molecular features across multiple human cancers.<bold>Materials and Methods: </bold>Multi-omics data, including gene expression, miRNA, DNA methylation, and somatic mutation, in approximately 10,000 patients across 30 cancer types from The Cancer Genome Atlas, Gene Expression Omnibus, PRECOG, and our institution were enrolled in this study.<bold>Results: </bold>Based on a robust gene signature, we established an invasiveness score and found that the score was significantly associated with worse prognosis in almost all cancers. Then, we identified common invasiveness-associated dysregulated molecular features between high- and low-invasiveness score group across multiple cancers, as well as investigated their mutual interfering relationships thus determining whether the dysregulation of invasiveness-related genes was caused by abnormal promoter methylation or miRNA expression. We also analyzed the correlations between the drug sensitivity data from cancer cell lines and the expression level of 685 invasiveness-related genes differentially expressed in at least ten cancer types. An integrated analysis of the correlations among invasiveness-related genetic features and drug response were conducted in esophageal carcinoma patients to outline the complicated regulatory mechanism of tumor invasiveness status in multiple dimensions. Moreover, functional enrichment suggests the invasiveness score might serve as a predictive biomarker for cancer patients receiving immunotherapy.<bold>Conclusion: </bold>Our pan-cancer study provides a comprehensive atlas of tumor invasiveness and may guide more precise therapeutic strategies for tumor patients. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
14795876
Volume :
19
Issue :
1
Database :
Complementary Index
Journal :
Journal of Translational Medicine
Publication Type :
Academic Journal
Accession number :
149470508
Full Text :
https://doi.org/10.1186/s12967-021-02773-x