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FlexTaxD: flexible modification of taxonomy databases for improved sequence classification.

Authors :
Sundell, David
Öhrman, Caroline
Svensson, Daniel
Karlsson, Edvin
Brindefalk, Björn
Myrtennäs, Kerstin
Ahlinder, Jon
Antwerpen, Markus H
Walter, Mathias C
Forsman, Mats
Stenberg, Per
Sjödin, Andreas
Source :
Bioinformatics; Nov2021, Vol. 37 Issue 21, p3932-3933, 2p
Publication Year :
2021

Abstract

Summary The Flexible Taxonomy Database framework provides a method for modification and merging official and custom taxonomic databases to create improved databases. Using such databases will increase accuracy and precision of existing methods to classify sequence reads. Availability and implementation Source code is freely available at https://github.com/FOI-Bioinformatics/flextaxd and installable through Bioconda. [ABSTRACT FROM AUTHOR]

Subjects

Subjects :
DATABASES
TAXONOMY
CLASSIFICATION

Details

Language :
English
ISSN :
13674803
Volume :
37
Issue :
21
Database :
Complementary Index
Journal :
Bioinformatics
Publication Type :
Academic Journal
Accession number :
153738335
Full Text :
https://doi.org/10.1093/bioinformatics/btab621