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Optimizing viral genome subsampling by genetic diversity and temporal distribution (TARDiS) for phylogenetics.

Authors :
Marini, Simone
Mavian, Carla
Riva, Alberto
Prosperi, Mattia
Salemi, Marco
Magalis, Brittany Rife
Source :
Bioinformatics; 2/1/2022, Vol. 38 Issue 3, p856-860, 5p
Publication Year :
2022

Abstract

Summary TARDiS is a novel phylogenetic tool for optimal genetic subsampling. It optimizes both genetic diversity and temporal distribution through a genetic algorithm. Availability and implementation TARDiS, along with example datasets and a user manual, is available at https://github.com/smarini/tardis-phylogenetics [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
13674803
Volume :
38
Issue :
3
Database :
Complementary Index
Journal :
Bioinformatics
Publication Type :
Academic Journal
Accession number :
154944267
Full Text :
https://doi.org/10.1093/bioinformatics/btab725