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TREM2 as a Prognostic Biomarker for Osteosarcoma Microenvironment Remodeling.
- Source :
- Journal of Oncology; 2/17/2023, p1-14, 14p
- Publication Year :
- 2023
-
Abstract
- The tumor microenvironment (TME) acts as a crucial role in the occurrence and development of osteosarcoma (OS). Despite this, the mechanism controlling the components of immunity and stroma in the tumor microenvironment remains a mystery. To conduct this study, we download and collate transcriptome data from the TARGET database, whose full name is Therapeutically Applicable Research to Generate Effective Treatments, as well as available clinical information of OS. The CIBERSORT and ESTIMATE methodology are used to acquire the proportions of components of immunity and stroma and tumor-infiltrating immune cells (TICs). Protein-protein interaction (PPI) networks and Cox regression analysis are used to select differentially expressed genes (DEGs). A prognostic biomarker is determined by intersecting univariate COX and PPI results, which lead to the finding of Triggering receptor expressed on myeloid cells-2 (TREM2). Based on the next analysis, TREM2 expression is positively correlated with OS survival time. Immune function-related genes have enrichment in the group with high expression of TREM2, according to gene set enrichment analysis (GSEA). The percentage of TICs by CIBERSORT methodology revealed that the expression of TREM2 is positively associated with follicular helper T cells, CD8-positive T cells, and M2 macrophages and negatively correlated with plasma cells, M0 macrophages, and naive CD4-positive T cells. All results suggest a possible integral role of TREM2 in the immune-related events of TME. Therefore, TREM2 may be a potential indicator of remodeling of TME in osteosarcoma, which is useful and helpful in predicting the clinical prognostic outcome of OS patients and provide a unique perspective for immunotherapy for OS. [ABSTRACT FROM AUTHOR]
- Subjects :
- DATABASES
STATISTICS
MEDICAL information storage & retrieval systems
OSTEOSARCOMA
LOG-rank test
IMMUNOLOGIC receptors
MANN Whitney U Test
MACROPHAGES
GENE expression
MYELOID-derived suppressor cells
DESCRIPTIVE statistics
GENE expression profiling
KAPLAN-Meier estimator
TUMOR markers
T cells
PROPORTIONAL hazards models
T helper cells
Subjects
Details
- Language :
- English
- ISSN :
- 16878450
- Database :
- Complementary Index
- Journal :
- Journal of Oncology
- Publication Type :
- Academic Journal
- Accession number :
- 161966881
- Full Text :
- https://doi.org/10.1155/2023/3677789