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Diversity and Distribution Characteristics of Viruses from Soda Lakes.

Authors :
ZeinEldin, Ramadan A.
Ahmed, Marwa M.
Hassanein, Wael S.
Elshafey, Naglaa
Sofy, Ahmed R.
Hamedo, Hend A.
Elnosary, Mohamed E.
Source :
Genes; Feb2023, Vol. 14 Issue 2, p323, 16p
Publication Year :
2023

Abstract

Viruses are the most abundant living things and a source of genetic variation. Despite recent research, we know little about their biodiversity and geographic distribution. We used different bioinformatics tools, MG-RAST, genome detective web tools, and GenomeVx, to describe the first metagenomic examination of haloviruses in Wadi Al-Natrun. The discovered viromes had remarkably different taxonomic compositions. Most sequences were derived from double-stranded DNA viruses, especially from Myoviridae, Podoviridae, Siphoviridae, Herpesviridae, Bicaudaviridae, and Phycodnaviridae families; single-stranded DNA viruses, especially from the family Microviridae; and positive-strand RNA viruses, especially from the family Potyviridae. Additionally, our results showed that Myohalovirus chaoS9 has eight Contigs and is annotated to 18 proteins as follows: tail sheath protein, tco, nep, five uncharacterized proteins, HCO, major capsid protein, putative pro head protease protein, putative head assembly protein, CxxC motive protein, terl, HTH domain protein, and terS Exon 2. Additionally, Halorubrum phage CGphi46 has 19 proteins in the brine sample as follows: portal protein, 17 hypothetical proteins, major capsid protein, etc. This study reveals viral lineages, suggesting the Virus's global dispersal more than other microorganisms. Our study clarifies how viral communities are connected and how the global environment changes. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
20734425
Volume :
14
Issue :
2
Database :
Complementary Index
Journal :
Genes
Publication Type :
Academic Journal
Accession number :
162133366
Full Text :
https://doi.org/10.3390/genes14020323