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Genomic, transcriptomic and epigenomic sequencing data of the B-cell leukemia cell line REH.

Authors :
Lysenkova Wiklander, Mariya
Övernäs, Elin
Lagensjö, Johanna
Raine, Amanda
Petri, Anna
Wiman, Ann-Christin
Ramsell, Jon
Marincevic-Zuniga, Yanara
Gezelius, Henrik
Martin, Tom
Bunikis, Ignas
Ekberg, Sara
Erlandsson, Rikard
Larsson, Pontus
Mosbech, Mai-Britt
Häggqvist, Susana
Hellstedt Kerje, Susanne
Feuk, Lars
Ameur, Adam
Liljedahl, Ulrika
Source :
BMC Research Notes; 10/10/2023, Vol. 16 Issue 1, p1-5, 5p
Publication Year :
2023

Abstract

Objectives: The aim of this data paper is to describe a collection of 33 genomic, transcriptomic and epigenomic sequencing datasets of the B-cell acute lymphoblastic leukemia (ALL) cell line REH. REH is one of the most frequently used cell lines for functional studies of pediatric ALL, and these data provide a multi-faceted characterization of its molecular features. The datasets described herein, generated with short- and long-read sequencing technologies, can both provide insights into the complex aberrant karyotype of REH, and be used as reference datasets for sequencing data quality assessment or for methods development. Data description: This paper describes 33 datasets corresponding to 867 gigabases of raw sequencing data generated from the REH cell line. These datasets include five different approaches for whole genome sequencing (WGS) on four sequencing platforms, two RNA sequencing (RNA-seq) techniques on two different sequencing platforms, DNA methylation sequencing, and single-cell ATAC-sequencing. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
17560500
Volume :
16
Issue :
1
Database :
Complementary Index
Journal :
BMC Research Notes
Publication Type :
Academic Journal
Accession number :
172892966
Full Text :
https://doi.org/10.1186/s13104-023-06537-2