Back to Search Start Over

OmicNavigator: open-source software for the exploration, visualization, and archival of omic studies.

Authors :
Ernst, Terrence R.
Blischak, John D.
Nordlund, Paul
Dalen, Joe
Moore, Justin
Bhamidipati, Akshay
Dwivedi, Pankaj
LoGrasso, Joe
Curado, Marco Rocha
Engelmann, Brett Warren
Source :
BMC Bioinformatics; 4/24/2024, Vol. 25 Issue 1, p1-10, 10p
Publication Year :
2024

Abstract

Background: The results of high-throughput biology ('omic') experiments provide insight into biological mechanisms but can be challenging to explore, archive and share. The scale of these challenges continues to grow as omic research volume expands and multiple analytical technologies, bioinformatic pipelines, and visualization preferences have emerged. Multiple software applications exist that support omic study exploration and/or archival. However, an opportunity remains for open-source software that can archive and present the results of omic analyses with broad accommodation of study-specific analytical approaches and visualizations with useful exploration features. Results: We present OmicNavigator, an R package for the archival, visualization and interactive exploration of omic studies. OmicNavigator enables bioinformaticians to create web applications that interactively display their custom visualizations and analysis results linked with app-derived analytical tools, graphics, and tables. Studies created with OmicNavigator can be viewed within an interactive R session or hosted on a server for shared access. Conclusions: OmicNavigator can be found at https://github.com/abbvie-external/OmicNavigator [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
14712105
Volume :
25
Issue :
1
Database :
Complementary Index
Journal :
BMC Bioinformatics
Publication Type :
Academic Journal
Accession number :
176804823
Full Text :
https://doi.org/10.1186/s12859-024-05743-4