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The Wild West of spike-in normalization.

Authors :
Patel, Lauren A.
Cao, Yuwei
Mendenhall, Eric M.
Benner, Christopher
Goren, Alon
Source :
Nature Biotechnology; Sep2024, Vol. 42 Issue 9, p1343-1349, 7p
Publication Year :
2024

Abstract

The proper use of spike-in normalization in ChIP-seq improves sensitivity for detecting genome-wide changes between conditions, but improper use is common, calling some biological conclusions into question. A survey of public datasets generates guidelines for implementation of spike-in normalization for future ChIP-seq experiments. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
10870156
Volume :
42
Issue :
9
Database :
Complementary Index
Journal :
Nature Biotechnology
Publication Type :
Academic Journal
Accession number :
179656211
Full Text :
https://doi.org/10.1038/s41587-024-02377-y