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Plant-Based Microarray Data at the European Bioinformatics Institute. Introducing AtMIAMExpress, a Submission Tool for Arabidopsis Gene Expression Data to ArrayExpress.
- Source :
- Plant Physiology; Oct2005, Vol. 139 Issue 2, p632-636, 5p, 1 Diagram, 1 Graph
- Publication Year :
- 2005
-
Abstract
- ArrayExpress is a public microarray repository founded on the Minimum Information About a Microarray Experiment (MIAME) principles that stores MIAME-compliant gene expression data. Plant-based data sets represent approximately one-quarter of the experiments in ArrayExpress. The majority are based on Arabidopsis (Arabidopsis thaliana); however, there are other data sets based on Triticum aestivum, Hordeum vulgare, and Populus subsp. AtMIAMExpress is an open-source Web-based software application for the submission of Arabidopsis-based microarray data to ArrayExpress. AtMIAMExpress exports data in MAGE-ML format for upload to any MAGE-ML-compliant application, such as J-Express and ArrayExpress. It was designed as a tool for users with minimal bioinformatics expertise, has comprehensive help and user support, and represents a simple solution to meeting the MIAME guidelines for the Arabidopsis community. Plant data are queryable both in ArrayExpress and in the Data Warehouse databases, which support queries based on gene-centric and sample-centric annotation. The AtMIAMExpress submission tool is available at http://www.ebi.ac.uk/at-miamexpress/. The software is open source and is available from http://sourceforge.net/projects/miamexpress/. For information, contact miamexpress@ebi.ac.uk. [ABSTRACT FROM AUTHOR]
- Subjects :
- BIOINFORMATICS
DATABASES
COMPUTER software
WEBSITES
ARABIDOPSIS
GENE expression
Subjects
Details
- Language :
- English
- ISSN :
- 00320889
- Volume :
- 139
- Issue :
- 2
- Database :
- Complementary Index
- Journal :
- Plant Physiology
- Publication Type :
- Academic Journal
- Accession number :
- 19032199
- Full Text :
- https://doi.org/10.1104/pp.105.063156