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Chromatin profiling by directly sequencing small quantities of immunoprecipitated DNA.

Authors :
Goren, Alon
Ozsolak, Fatih
Shoresh, Noam
Ku, Manching
Adli, Mazhar
Hart, Chris
Gymrek, Melissa
Zuk, Or
Regev, Aviv
Milos, Patrice M.
Bernstein, Bradley E.
Source :
Nature Methods; Jan2010, Vol. 7 Issue 1, p47-49, 3p, 3 Graphs
Publication Year :
2010

Abstract

Chromatin structure and transcription factor localization can be assayed genome-wide by sequencing genomic DNA fractionated by protein occupancy or other properties, but current technologies involve multiple steps that introduce bias and inefficiency. Here we apply a single-molecule approach to directly sequence chromatin immunoprecipitated DNA with minimal sample manipulation. This method is compatible with just 50 pg of DNA and should thus facilitate charting chromatin maps from limited cell populations. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
15487091
Volume :
7
Issue :
1
Database :
Complementary Index
Journal :
Nature Methods
Publication Type :
Academic Journal
Accession number :
47163212
Full Text :
https://doi.org/10.1038/nmeth.1404