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Fast time-reversible algorithms for molecular dynamics of rigid-body systems.

Authors :
Kajima, Yasuhiro
Hiyama, Miyabi
Ogata, Shuji
Kobayashi, Ryo
Tamura, Tomoyuki
Source :
Journal of Chemical Physics; 6/21/2012, Vol. 136 Issue 23, p234105, 8p, 1 Chart, 2 Graphs
Publication Year :
2012

Abstract

In this paper, we present time-reversible simulation algorithms for rigid bodies in the quaternion representation. By advancing a time-reversible algorithm [Y. Kajima, M. Hiyama, S. Ogata, and T. Tamura, J. Phys. Soc. Jpn. 80, 114002 (2011)] that requires iterations in calculating the angular velocity at each time step, we propose two kinds of iteration-free fast time-reversible algorithms. They are easily implemented in codes. The codes are compared with that of existing algorithms through demonstrative simulation of a nanometer-sized water droplet to find their stability of the total energy and computation speeds. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
00219606
Volume :
136
Issue :
23
Database :
Complementary Index
Journal :
Journal of Chemical Physics
Publication Type :
Academic Journal
Accession number :
77656850
Full Text :
https://doi.org/10.1063/1.4729284