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IR Spectra of Crystalline Nucleobases: Combination of Periodic Harmonic Calculations with Anharmonic Corrections Based on Finite Models

Authors :
Beć, Krzysztof B.
Grabska, Justyna
Czarnecki, Mirosław A.
Huck, Christian W.
Wójcik, Marek J.
Nakajima, Takahito
Ozaki, Yukihiro
Source :
The Journal of Physical Chemistry - Part B; November 2019, Vol. 123 Issue: 47 p10001-10013, 13p
Publication Year :
2019

Abstract

This work reports a theoretical study of infrared (IR) spectra of four nucleobases (adenine, cytosine, guanine, and thymine) in the crystalline state. The effects responsible for the fine spectral features were revealed, and the nonfundamental bands significantly contributing to the IR fingerprint region were successfully reproduced. Additionally, we compared the fundamental bands simulated for periodic models in harmonic approximation with the results obtained for finite models in anharmonic approximation. On this basis, we concluded that accurate description of the chemical neighborhood is more essential for the IR fingerprint region than the anharmonicity. Comparison with previous results indicates that the vibrational properties and the nature of intermolecular interactions of nucleobases in the crystalline state remain similar to those in solution. Therefore, the conclusions obtained for well-defined crystalline structures of nucleobases are general and helpful in understanding the vibrational spectra and properties of nucleobases and their derivatives. Finally, this work evidences that anharmonic force field based on finite models may be applied as an inexpensive correction to the harmonic spectrum of an infinite periodic system.

Details

Language :
English
ISSN :
15206106 and 15205207
Volume :
123
Issue :
47
Database :
Supplemental Index
Journal :
The Journal of Physical Chemistry - Part B
Publication Type :
Periodical
Accession number :
ejs51456368
Full Text :
https://doi.org/10.1021/acs.jpcb.9b06285