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Multi-ancestry genome-wide association analyses improve resolution of genes and pathways influencing lung function and chronic obstructive pulmonary disease risk

Authors :
Shrine, Nick
Izquierdo, Abril G.
Chen, Jing
Packer, Richard
Hall, Robert J.
Guyatt, Anna L.
Batini, Chiara
Thompson, Rebecca J.
Pavuluri, Chandan
Malik, Vidhi
Hobbs, Brian D.
Moll, Matthew
Kim, Wonji
Tal-Singer, Ruth
Bakke, Per
Fawcett, Katherine A.
John, Catherine
Coley, Kayesha
Piga, Noemi Nicole
Pozarickij, Alfred
Lin, Kuang
Millwood, Iona Y.
Chen, Zhengming
Li, Liming
Wijnant, Sara R. A.
Lahousse, Lies
Brusselle, Guy
Uitterlinden, Andre G.
Manichaikul, Ani
Oelsner, Elizabeth C.
Rich, Stephen S.
Barr, R. Graham
Kerr, Shona M.
Vitart, Veronique
Brown, Michael R.
Wielscher, Matthias
Imboden, Medea
Jeong, Ayoung
Bartz, Traci M.
Gharib, Sina A.
Flexeder, Claudia
Karrasch, Stefan
Gieger, Christian
Peters, Annette
Stubbe, Beate
Hu, Xiaowei
Ortega, Victor E.
Meyers, Deborah A.
Bleecker, Eugene R.
Gabriel, Stacey B.
Gupta, Namrata
Smith, Albert Vernon
Luan, Jian’an
Zhao, Jing-Hua
Hansen, Ailin F.
Langhammer, Arnulf
Willer, Cristen
Bhatta, Laxmi
Porteous, David
Smith, Blair H.
Campbell, Archie
Sofer, Tamar
Lee, Jiwon
Daviglus, Martha L.
Yu, Bing
Lim, Elise
Xu, Hanfei
O’Connor, George T.
Thareja, Gaurav
Albagha, Omar M. E.
Suhre, Karsten
Granell, Raquel
Faquih, Tariq O.
Hiemstra, Pieter S.
Slats, Annelies M.
Mullin, Benjamin H.
Hui, Jennie
James, Alan
Beilby, John
Patasova, Karina
Hysi, Pirro
Koskela, Jukka T.
Wyss, Annah B.
Jin, Jianping
Sikdar, Sinjini
Lee, Mikyeong
May-Wilson, Sebastian
Pirastu, Nicola
Kentistou, Katherine A.
Joshi, Peter K.
Timmers, Paul R. H. J.
Williams, Alexander T.
Free, Robert C.
Wang, Xueyang
Morrison, John L.
Gilliland, Frank D.
Chen, Zhanghua
Wang, Carol A.
Foong, Rachel E.
Harris, Sarah E.
Taylor, Adele
Redmond, Paul
Cook, James P.
Mahajan, Anubha
Lind, Lars
Palviainen, Teemu
Lehtimäki, Terho
Raitakari, Olli T.
Kaprio, Jaakko
Rantanen, Taina
Pietiläinen, Kirsi H.
Cox, Simon R.
Pennell, Craig E.
Hall, Graham L.
Gauderman, W. James
Brightling, Chris
Wilson, James F.
Vasankari, Tuula
Laitinen, Tarja
Salomaa, Veikko
Mook-Kanamori, Dennis O.
Timpson, Nicholas J.
Zeggini, Eleftheria
Dupuis, Josée
Hayward, Caroline
Brumpton, Ben
Langenberg, Claudia
Weiss, Stefan
Homuth, Georg
Schmidt, Carsten Oliver
Probst-Hensch, Nicole
Jarvelin, Marjo-Riitta
Morrison, Alanna C.
Polasek, Ozren
Rudan, Igor
Lee, Joo-Hyeon
Sayers, Ian
Rawlins, Emma L.
Dudbridge, Frank
Silverman, Edwin K.
Strachan, David P.
Walters, Robin G.
Morris, Andrew P.
London, Stephanie J.
Cho, Michael H.
Wain, Louise V.
Hall, Ian P.
Tobin, Martin D.
Source :
Nature Genetics; March 2023, Vol. 55 Issue: 3 p410-422, 13p
Publication Year :
2023

Abstract

Lung-function impairment underlies chronic obstructive pulmonary disease (COPD) and predicts mortality. In the largest multi-ancestry genome-wide association meta-analysis of lung function to date, comprising 588,452 participants, we identified 1,020 independent association signals implicating 559 genes supported by ≥2 criteria from a systematic variant-to-gene mapping framework. These genes were enriched in 29 pathways. Individual variants showed heterogeneity across ancestries, age and smoking groups, and collectively as a genetic risk score showed strong association with COPD across ancestry groups. We undertook phenome-wide association studies for selected associated variants as well as trait and pathway-specific genetic risk scores to infer possible consequences of intervening in pathways underlying lung function. We highlight new putative causal variants, genes, proteins and pathways, including those targeted by existing drugs. These findings bring us closer to understanding the mechanisms underlying lung function and COPD, and should inform functional genomics experiments and potentially future COPD therapies.

Details

Language :
English
ISSN :
10614036 and 15461718
Volume :
55
Issue :
3
Database :
Supplemental Index
Journal :
Nature Genetics
Publication Type :
Periodical
Accession number :
ejs62509896
Full Text :
https://doi.org/10.1038/s41588-023-01314-0