Back to Search Start Over

WeNMR: Structural biology on the grid

Authors :
Wassenaar, T. A.
Dijk, M.
Loureiro-Ferreira, N.
Schot, G.
Vries, S. J.
Schmitz, C.
Zwan, J.
Boelens, R.
Giachetti, A.
Ferella, L.
Rosato, A.
Bertini, I.
Herrmann, T.
Jonker, H. R. A.
Bagaria, A.
Jaravine, V.
Güntert, P.
Schwalbe, H.
Vranken, W. F.
Doreleijers, J. F.
Vriend, G.
Vuister, G. W.
Franke, D.
Kikhney, A.
Svergun, D. I.
Fogh, R.
Ionides, J.
Ernest Laue
Spronk, C.
Verlato, M.
Badoer, S.
Dal Pra, S.
Mazzucato, M.
Frizziero, E.
Bonvin, A. M. J. J.
Bijvoet Center for Biomolecular Research [Utrecht]
Utrecht University [Utrecht]
Biocomputing Group
University of Calgary
European Grid Infrastructure (EGI)
Magnetic Resonance Center
Università degli Studi di Firenze = University of Florence [Firenze]
Department of Chemistry
ISA - Centre de RMN à très hauts champs (2011-2018)
Institut des Sciences Analytiques (ISA)
Université Claude Bernard Lyon 1 (UCBL)
Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL)
Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)
Center for Biomolecular Magnetic Resonance
Goethe-University Frankfurt am Main
Institute of Organic Chemistry and Chemical Biology
Institute of Biophysical Chemistry and Frankfurt Institute for Advanced Studies
Protein Biophysics - Institute of Molecules and Materials
Radboud university [Nijmegen]
Department of Structural Biology
Vlaams Instituut voor Biotechnologie
Structural Biology Brussels (SBB)
Vrije Universiteit [Brussels] (VUB)
European Bioinformatics Institute [Hinxton] (EMBL-EBI)
EMBL Heidelberg
Istituto Nazionale di Fisica Nucleare
Terstyanszky Gabor
Kiss Tamas
Protein Biophysics/IMM
CMB
Radboud University Medical Center [Nijmegen]
European Molecular Biology Laboratory [Hamburg] (EMBL)
Dpt of Biochemistry [Cambridge]
University of Cambridge [UK] (CAM)
UAB 'Spronk NMR Consultancy'
Molecular and Computational Toxicology
AIMMS
Bijvoet Center for Biomolecular Research
Utrecht University
University of Florence
Centre de RMN à très hauts champs
Université Claude Bernard - Lyon I (UCBL) - PRES Université de Lyon - École Normale Supérieure (ENS) - Lyon - CNRS - Université Claude Bernard - Lyon I (UCBL) - PRES Université de Lyon - École Normale Supérieure (ENS) - Lyon - CNRS
Goethe University Frankfurt
Radboud University Nijmegen
Structural Biology Brussels
Vrije Universiteit Brussel
European Bioinformatics Institute
European Grid Infrastructure ( EGI )
Institut des Sciences Analytiques ( ISA )
Centre National de la Recherche Scientifique ( CNRS ) -Université de Lyon-Université Claude Bernard Lyon 1 ( UCBL )
Université de Lyon-École normale supérieure - Lyon ( ENS Lyon ) -Centre National de la Recherche Scientifique ( CNRS ) -Université de Lyon-Université Claude Bernard Lyon 1 ( UCBL )
Université de Lyon-École normale supérieure - Lyon ( ENS Lyon )
Structural Biology Brussels ( SBB )
Vrije Universiteit [Brussel] ( VUB )
Vrije Universiteit Brussel (VUB)
Radboud University Nijmegen Medical Centre
European Molecular Biology Laboratory
European Molecular Biology Laboratory (EMBL)
Department of Biochemistry
University of Cambridge (UK)
European Molecular Biology Laboratory [Hamburg] ( EMBL )
University of Cambridge [UK] ( CAM )
Source :
Scopus-Elsevier, Hyper Article en Ligne, Flore (Florence Research Repository), CORE (RIOXX-UK Aggregator), Mémoires en Sciences de l'Information et de la Communication, Datacite, NARCIS, ORCID, INRIA a CCSD electronic archive server, UnpayWall, Microsoft Academic Graph, ICT FP7 Publications Database, CORE, DANS (Data Archiving and Networked Services), JOURNAL OF GRID COMPUTING, 10(4), 743-767. Springer Netherlands, CEUR-WS Proceedings, 3rd International Workshop on Science Gateways for Life Sciences-IWSG-Life 2011, IWSG-Life, 2011, IWSG-Life, IWSG-Life 2011: Science Gateways for Life Sciences 2011, Journal of Grid Computing, Springer Verlag (Germany), 2012, 10 (4), pp.743-767, Terstyanszky Gabor ; Kiss Tamas. 3rd International Workshop on Science Gateways for Life Sciences-IWSG-Life 2011, Jun 2011, London, United Kingdom. 819, Terstyanszky Gabor ; Kiss Tamas. 3rd International Workshop on Science Gateways for Life Sciences-IWSG-Life 2011, Jun 2011, London, United Kingdom. 819, 2011, 3rd International Workshop on Science Gateways for Life Sciences-IWSG-Life 2011, Jun 2011, London, United Kingdom, Journal of Grid Computing, Springer Verlag, 2012, 10 (4), pp.743-767, Journal of Grid Computing

Abstract

International audience The WeNMR (http://www.wenmr.eu) project is a European Union funded international effort to streamline and automate analysis of Nuclear Magnetic Resonance (NMR) and Small Angle X-Ray scattering (SAXS) imaging data for atomic and near-atomic resolution molecular structures. Conventional calculation of structure requires the use of various software packages, considerable user expertise and ample computational resources. To facilitate the use of NMR spectroscopy and SAXS in life sciences the WeNMR consortium has established standard computational workflows and services through easy-to-use web interfaces, while still retaining sufficient flexibility to handle more specific requests. Thus far, a number of programs often used in structural biology have been made available through application portals. The implementation of these services, in particular the distribution of calculations to a Grid computing infrastructure, involves a novel mechanism for submission and handling of jobs that is independent of the type of job being run. With over 450 registered users (September 2012), WeNMR is currently the largest Virtual Organization (VO) in life sciences. With its large and worldwide user community, WeNMR has become the first Virtual Research Community officially recognized by the European Grid Infrastructure (EGI).

Details

ISSN :
15729184 and 15707873
Database :
OpenAIRE
Journal :
Scopus-Elsevier, Hyper Article en Ligne, Flore (Florence Research Repository), CORE (RIOXX-UK Aggregator), Mémoires en Sciences de l'Information et de la Communication, Datacite, NARCIS, ORCID, INRIA a CCSD electronic archive server, UnpayWall, Microsoft Academic Graph, ICT FP7 Publications Database, CORE, DANS (Data Archiving and Networked Services), JOURNAL OF GRID COMPUTING, 10(4), 743-767. Springer Netherlands, CEUR-WS Proceedings, 3rd International Workshop on Science Gateways for Life Sciences-IWSG-Life 2011, IWSG-Life, 2011, IWSG-Life, IWSG-Life 2011: Science Gateways for Life Sciences 2011, Journal of Grid Computing, Springer Verlag (Germany), 2012, 10 (4), pp.743-767, Terstyanszky Gabor ; Kiss Tamas. 3rd International Workshop on Science Gateways for Life Sciences-IWSG-Life 2011, Jun 2011, London, United Kingdom. 819, Terstyanszky Gabor ; Kiss Tamas. 3rd International Workshop on Science Gateways for Life Sciences-IWSG-Life 2011, Jun 2011, London, United Kingdom. 819, 2011, 3rd International Workshop on Science Gateways for Life Sciences-IWSG-Life 2011, Jun 2011, London, United Kingdom, Journal of Grid Computing, Springer Verlag, 2012, 10 (4), pp.743-767, Journal of Grid Computing
Accession number :
edsair.dedup.wf.001..211cbd525e70cbc5819f1549b338e9e3