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The complete chloroplast genome sequence of Chinese wild grape Vitis amurensis (Vitaceae: Vitis L.)
- Source :
- Conservation Genetics Resources. 9:43-46
- Publication Year :
- 2016
- Publisher :
- Springer Science and Business Media LLC, 2016.
-
Abstract
- Vitis amurensis is a species of wild grape with high ecological, medicinal, and economic values. Here, the complete chloroplast genome of this plant was assembled from whole-genome high-throughput sequencing data. The circular double-stranded DNA molecule is 160,953 bp in size, including a pair of inverted repeats (26,354 bp each) separated by large (89,187 bp) and small (19,058 bp) single-copy regions. The chloroplast genome contains 133 genes, including 88 protein-coding genes (80 PCG species), 37 transfer RNA genes (29 tRNA species) and eight ribosomal RNA genes (four rRNA species), 20 of which are duplicated, including eight protein-coding, eight tRNA, and four rRNA genes. The base composition is asymmetric (30.93 % A, 19.07 % C, 18.33 % G, 31.67 % T) with an overall A + T content of 62.60 %. A phylogenetic analysis based on complete chloroplast genome sequences showed that V. amurensis is closely related to V. vinifera, V. aestivalis, and V. rotundifolia.
- Subjects :
- 0106 biological sciences
0301 basic medicine
Genetics
Whole genome sequencing
Inverted repeat
Biology
Ribosomal RNA
01 natural sciences
Genome
DNA sequencing
03 medical and health sciences
030104 developmental biology
Botany
Transfer RNA
wine
wine.grape_variety
Gene
Ecology, Evolution, Behavior and Systematics
Vitis amurensis
010606 plant biology & botany
Subjects
Details
- ISSN :
- 18777260 and 18777252
- Volume :
- 9
- Database :
- OpenAIRE
- Journal :
- Conservation Genetics Resources
- Accession number :
- edsair.doi...........5d0498e1a9de1735590a894064e67705
- Full Text :
- https://doi.org/10.1007/s12686-016-0615-y