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Lake Naivasha is a shallow freshwater lake in the Rift Valley of Kenya. Since the 1980s, when the lake showed a seasonal shift between diatom and cyanobacterial dominance it has become moderately eutrophic. Its algal assemblage is now dominated by a persistent Aulacoseira italica population both numerically and in terms of contribution to overall primary production. Algal and cyanobacterial counts were used to derive Simpson’s diversity, succession rate and total community succession, focusing on the 10 most numerically abundant taxa. 170 species were identified, 43 of which were in common with the 143 found in 1979–80, before the increase in trophic state. Most diatoms are indicators of moderate to high nutrient conditions. There is little horizontal or vertical variation in successional processes throughout the lake and although the absolute abundance of cells varies widely, proportional composition is relatively stable. In Crescent Island lagoon, the only regularly stratified site, hypolimnetic succession rates are lower than those in the epilimnion. Overall, community composition is controlled by mixing (and hence light regime) and nutrient availability. With ‘endless summer’ conditions and full mixing, there is a successional pattern of ‘muted seasonality’ adapted to physical instability and environmental stability.