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Effects of temperature and isotopic substitution on electron attachment dynamics of guanine–cytosine base pair: Ring-polymer and classical molecular dynamics simulations
- Source :
- Chemical Physics. 472:1-8
- Publication Year :
- 2016
- Publisher :
- Elsevier BV, 2016.
-
Abstract
- The dynamical process of electron attachment to a guanine–cytosine pair in the normal (h-GC) and deuterated (d-GC) forms has been studied theoretically by semiclassical ring-polymer molecular dynamics (RPMD) simulations using the empirical valence bond model. The initially formed dipole-bound anion is converted rapidly to the valence-bound anion within about 0.1 ps in both h-GC and d-GC. However, the subsequent proton transfer in h-GC occurs with a rate five times greater than the deuteron transfer in d-GC. The change of rates with isotopic substitution and temperature variation in the RPMD simulations are quantitatively and qualitatively different from those in the classical molecular dynamics (MD) simulations, demonstrating the importance of nuclear quantum effects on the dynamics of this system.
- Subjects :
- 010304 chemical physics
Proton
Chemistry
General Physics and Astronomy
Semiclassical physics
010402 general chemistry
Ring (chemistry)
01 natural sciences
0104 chemical sciences
Ion
Molecular dynamics
Deuterium
Reaction dynamics
Chemical physics
0103 physical sciences
Valence bond theory
Physical and Theoretical Chemistry
Atomic physics
Subjects
Details
- ISSN :
- 03010104
- Volume :
- 472
- Database :
- OpenAIRE
- Journal :
- Chemical Physics
- Accession number :
- edsair.doi...........b96596e1f3c5da71424fe8553a17db6c
- Full Text :
- https://doi.org/10.1016/j.chemphys.2016.02.019