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Effects of temperature and isotopic substitution on electron attachment dynamics of guanine–cytosine base pair: Ring-polymer and classical molecular dynamics simulations

Authors :
Motoyuki Shiga
Yusuke Minoshima
Yusuke Seki
Toshiyuki Takayanagi
Source :
Chemical Physics. 472:1-8
Publication Year :
2016
Publisher :
Elsevier BV, 2016.

Abstract

The dynamical process of electron attachment to a guanine–cytosine pair in the normal (h-GC) and deuterated (d-GC) forms has been studied theoretically by semiclassical ring-polymer molecular dynamics (RPMD) simulations using the empirical valence bond model. The initially formed dipole-bound anion is converted rapidly to the valence-bound anion within about 0.1 ps in both h-GC and d-GC. However, the subsequent proton transfer in h-GC occurs with a rate five times greater than the deuteron transfer in d-GC. The change of rates with isotopic substitution and temperature variation in the RPMD simulations are quantitatively and qualitatively different from those in the classical molecular dynamics (MD) simulations, demonstrating the importance of nuclear quantum effects on the dynamics of this system.

Details

ISSN :
03010104
Volume :
472
Database :
OpenAIRE
Journal :
Chemical Physics
Accession number :
edsair.doi...........b96596e1f3c5da71424fe8553a17db6c
Full Text :
https://doi.org/10.1016/j.chemphys.2016.02.019