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Computational site-directed mutagenesis studies of the role of the hydrophobic triad on substrate binding in cholesterol oxidase
- Source :
- Proteins: Structure, Function, and Bioinformatics. 85:1645-1655
- Publication Year :
- 2017
- Publisher :
- Wiley, 2017.
-
Abstract
- Cholesterol oxidase (ChOx) is a flavoenzyme that oxidises and isomerises cholesterol (CHL) to form cholest-4-en-3-one. Molecular docking and molecular dynamics simulations were conducted to predict the binding interactions of CHL in the active site. Several key interactions (E361-CHL, N485-FAD and H447-CHL) were identified and which are likely to determine the correct positioning of CHL relative to flavin-adenine dinucleotide (FAD). Binding of CHL also induced changes in key residues of the active site leading to the closure of the oxygen channel. A group of residues, Y107, F444 and Y446, known as the hydrophobic triad, are believed to affect the binding of CHL in the active site. Computational site-directed mutagenesis of these residues revealed that their mutation affects the conformations of key residues in the active site, leading to non-optimal binding of CHL and to changes in the structure of the oxygen channel, all of which are likely to reduce the catalytic efficiency of ChOx. This article is protected by copyright. All rights reserved.
- Subjects :
- 0301 basic medicine
010304 chemical physics
Cholesterol oxidase
biology
Stereochemistry
Chemistry
food and beverages
Active site
macromolecular substances
biology.organism_classification
01 natural sciences
Biochemistry
Redox
Streptomyces
03 medical and health sciences
Molecular dynamics
030104 developmental biology
Structural Biology
Docking (molecular)
0103 physical sciences
polycyclic compounds
biology.protein
Catalytic efficiency
Site-directed mutagenesis
Molecular Biology
Subjects
Details
- ISSN :
- 08873585
- Volume :
- 85
- Database :
- OpenAIRE
- Journal :
- Proteins: Structure, Function, and Bioinformatics
- Accession number :
- edsair.doi...........bb391b6ccfd3b111ec79c13779fcebe7