Additional file 7 of Transcriptome analysis reveals major transcriptional changes during regrowth after mowing of red clover (Trifolium pratense)

Additional file 7: Table S1. Overview of the sampling locations for the plant material. Names of the fields belonging to the Biodiversity Exploratory or greenhouse populations are shown. As well as the location, coordinates and conditions (mown/cut and not mown/uncut). Table S3. Sources and basis for description and classification of the top 20 DEG. Table S4. Number of reads for each sequenced library (transcriptome ID) before and after trimming. Table S5. General features of the transcriptome of T. pratense. Table S6. Overall alignment rate of the single transcriptomes to the references transcriptome, values above 80% are good. Table S7. Annotation of T. pratense plant-specific against different databases. Table S8. Quality of the replicates. For each library replicate the number of transcripts above TPM of 1 is shown. Further the number of transcripts shared between to related replica is shown, as well as the number of transcripts unique for a replica. The similarity of the replicas was evaluated by calculating he percentage of the shared transcripts compared to the total number of transcripts of a replica. Table S10. Main classes based on the DE contigs. 16 main classes were developed to group the DE contigs. Table S11. GO Terms specifically enriched in the individual transcriptomes. Table S12. Shared contigs with corresponding annotation. Table S13. Detailed information about transcripts described during the discussion part. Table S14. Primer sequences.