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Bioinformatic analysis of the urine proteome of acute allograft rejection
Bioinformatic analysis of the urine proteome of acute allograft rejection
- Source :
- Journal of the American Society of Nephrology : JASN. 15(12)
- Publication Year :
- 2004
-
Abstract
- The urinary proteome in health and disease attracts increasing attention because of the potential diagnostic and pathophysiologic biomarker information carried by specific excreted proteins or their constellations. This cross-sectional study aimed to analyze the urinary proteome in patients with biopsy-proven acute rejection (n = 23) compared with transplant recipients with stable graft function (n = 22) and healthy volunteers (n = 20) and to correlate this with clinical, morphologic, and laboratory data. Urine samples were preadsorbed on four different protein chip surfaces, and the protein composition was analyzed using a surface-enhanced laser desorption/ionization time-of-flight mass spectrometer platform. The data were analyzed using two independent approaches to sample classification. Patients who experienced acute rejection could be distinguished from stable patients with a sensitivity of 90.5 to 91.3% and a specificity of 77.2 to 83.3%, depending on the classifier used. Protein masses that were important in constructing the classification algorithms included those of mass 2003.0, 2802.6, 4756.3, 5872.4, 6990.6, 19,018.8, and 25,665.7 Da. Normal urine was distinguished from transplant urine using a protein marker of mass 78,531.2 Da with both a sensitivity and a specificity of 100%. In conclusion, (1) urine proteome in transplant recipients with stable graft function was significantly different from healthy control subjects, and (2) acute rejections were characterized by a constellation of excreted proteins. Analysis of the urinary proteome may expedite the noninvasive prediction of acute graft rejection, thus importantly assisting in establishing the diagnosis.
- Subjects :
- Nephrology
Graft Rejection
Male
Proteomics
medicine.medical_specialty
Urinary system
Protein Array Analysis
Urine
Gastroenterology
Text mining
Internal medicine
Medicine
Humans
Transplantation, Homologous
Kidney
business.industry
Computational Biology
General Medicine
Kidney Transplantation
Pathophysiology
Transplantation
medicine.anatomical_structure
Immunology
Proteome
Acute Disease
Female
business
Subjects
Details
- ISSN :
- 10466673
- Volume :
- 15
- Issue :
- 12
- Database :
- OpenAIRE
- Journal :
- Journal of the American Society of Nephrology : JASN
- Accession number :
- edsair.doi.dedup.....01c102663393f52c52d58cf4b5d8e084