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Two tales: Worldwide distribution of Central Asian (CAS) versus ancestral East-African Indian (EAI) lineages of Mycobacterium tuberculosis underlines a remarkable cleavage for phylogeographical, epidemiological and demographical characteristics

Authors :
Nalin Rastogi
Yann Reynaud
David Couvin
Unité de la Tuberculose et des Mycobactéries - WHO Supranational TB Reference Laboratory
Institut Pasteur de la Guadeloupe
Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP)-Organisation Mondiale de la Santé / World Health Organization Office (OMS / WHO)
DC was awarded a Ph.D. fellowship by the European Social Funds through the Regional Council of Guadeloupe, while the work done at Institut Pasteur de la Guadeloupe was supported by a FEDER grant, financed by the European Union and Guadeloupe Region (Programme Opérationnel FEDER-Guadeloupe-Conseil Régional 2014-2020, Grant number 2015-FED-192).
The authors are highly grateful to various contributors who very kindly provided genotyping data to the previous versions of the database, from SpolDB1 (1999) to SpolDB4 (2006), and more recently to the SITVITWEB (2012) as well as the SITVIT2 (2018) and SITVITEXTEND (upcoming) databases.
European Project: 2015-FED-192,FEDER-Guadeloupe
Source :
PLoS ONE, PLoS ONE, Public Library of Science, 2019, 14 (7), pp.e0219706. ⟨10.1371/journal.pone.0219706⟩, Plos One (1932-6203) (Public Library Science), 2019-07, Vol. 14, N. 7, P. e0219706 (20p.), PLoS ONE, Vol 14, Iss 7, p e0219706 (2019)
Publication Year :
2019
Publisher :
Public Library of Science, 2019.

Abstract

International audience; The East African Indian (EAI) and Central Asian (CAS) lineages of Mycobacterium tuberculosis complex (MTBC) mainly infect tuberculosis (TB) patients in the eastern hemisphere which contains many of the 22 high TB burden countries including China and India. We investigated if phylogeographical, epidemiological and demographical characteristics for these 2 lineages differed in SITVIT2 database. Genotyping results and associated data (age, sex, HIV serology, drug resistance) on EAI and CAS lineages (n = 10,974 strains) were extracted. Phylogenetic and Bayesian, and other statistical analyses were used to compare isolates. The male/female sex ratio was 907/433 (2.09) for the EAI group vs. 881/544 (1.62) for CAS (p-value

Subjects

Subjects :
Male
MESH: Mycobacterium tuberculosis
MESH: Drug Resistance, Microbial
MESH: Geography
Epidemiology
MESH: Genotype
MESH: Child
MESH: Genetic Variation
MESH: Phylogeny
Child
Phylogeny
MESH: Middle Aged
Geography
MESH: Asia
Drug Resistance, Microbial
MESH: Infant
3. Good health
Actinobacteria
Phylogeography
Biogeography
MESH: Phylogeography
MESH: Young Adult
HIV epidemiology
Child, Preschool
Medicine
Genotyping
Tuberculosis
Genotype
Science
030106 microbiology
MESH: Bacterial Typing Techniques
Mycobacterium tuberculosis
03 medical and health sciences
MESH: Sex Factors
Phylogenetics
Genetics
Humans
Molecular Biology Techniques
Molecular Biology
Aged
MESH: Adolescent
MESH: Humans
Bacteria
MESH: Child, Preschool
Ecology and Environmental Sciences
Organisms
Biology and Life Sciences
Genetic Variation
Infant
MESH: Adult
Bayes Theorem
medicine.disease
Tropical Diseases
MESH: DNA, Bacterial
[SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology
Geographic Distribution
030104 developmental biology
Africa
MESH: India
MESH: Female
Population Genetics
Demography
0301 basic medicine
Bacterial Diseases
Extensively Drug-Resistant Tuberculosis
Population Dynamics
Drug resistance
Serology
Geographical Locations
Medicine and Health Sciences
MESH: Aged
Multidisciplinary
biology
MESH: Infant, Newborn
Africa, Eastern
Middle Aged
Bacterial Typing Techniques
Infectious Diseases
Mycobacterium tuberculosis complex
Female
Research Article
Adult
DNA, Bacterial
Asia
Adolescent
MESH: Bayes Theorem
India
Research and Analysis Methods
Young Adult
Sex Factors
medicine
MESH: Extensively Drug-Resistant Tuberculosis
MESH: Africa, Eastern
Evolutionary Biology
Population Biology
Infant, Newborn
biology.organism_classification
MESH: Male
People and Places
Earth Sciences

Details

Language :
English
ISSN :
19326203
Volume :
14
Issue :
7
Database :
OpenAIRE
Journal :
PLoS ONE
Accession number :
edsair.doi.dedup.....04b3698a3b745fead062983b16c94283