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Genetic diversity analysis of Varronia curassavica Jacq. accessions using ISSR markers
- Source :
- Repositório Institucional da UFS, Universidade Federal de Sergipe (UFS), instacron:UFS
- Publication Year :
- 2016
- Publisher :
- Fundação de Pesquisas Científicas de Ribeirão Preto (FUNPEC-RP), 2016.
-
Abstract
- Varronia curassavica Jacq. is a medicinal and aromatic plant from Brazil with significant economic importance. Studies on genetic diversity in active germplasm banks (AGB) are essential for conservation and breeding programs. The aim of this study was to analyze the genetic diversity of V. curassavica accessions of the AGB of Medicinal and Aromatic Plants of the Federal University of Sergipe (UFS), using inter-simple sequence repeat molecular markers. Twenty-four primers were tested, and 14 were polymorphic and informative, resulting in 149 bands with 97.98% polymorphism. The UPGMA dendrogram divided the accessions into Clusters I and II. Jaccard similarity coefficients for pair-wise comparisons of accessions ranged between 0.24 and 0.78. The pairs of accessions VCUR-001/VCUR-503, VCUR-001/VCUR-504, and VCUR-104/VCUR-501 showed relatively low similarity (0.24), and the pair of accessions VCUR-402/VCUR- 403 showed medium similarity (0.78). Twenty-eight accessions were divided into three distinct clusters, according to the STRUCTURE analysis. The genetic diversity of V. curassavica in the AGB of UFS is low to medium, and it requires expansion. Accession VCUR-802 is the most suitable for selection in breeding program of this species, since it clearly represents all of the diversity present in the AGB.
- Subjects :
- Genetic Markers
0106 biological sciences
0301 basic medicine
Germplasm
Jaccard index
Breeding program
Conservation
Biology
01 natural sciences
03 medical and health sciences
Botany
Genetics
Cluster Analysis
Plant breeding
Molecular Biology
Phylogeny
DNA Primers
Genetic diversity
Diversity
Cordia
Plants, Medicinal
Polymorphism, Genetic
Conservação
Dendrogram
ISSR
UPGMA
General Medicine
Plant Breeding
030104 developmental biology
Genetic marker
Diversidade
Varronia curassavica
Microsatellite Repeats
010606 plant biology & botany
Subjects
Details
- Language :
- English
- Database :
- OpenAIRE
- Journal :
- Repositório Institucional da UFS, Universidade Federal de Sergipe (UFS), instacron:UFS
- Accession number :
- edsair.doi.dedup.....0b54567f72a786dbb6faddfee3ec97ea