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Gridifying a Diffusion Tensor Imaging Analysis Pipeline

Authors :
Caan, M. W. A.
Vos, F. M.
van Kampen, A. H. C.
Olabarriaga, S. D.
van Vliet, L. J.
Parashar, Manish
Buyyar, Rajkumar
Amsterdam Neuroscience
Radiology and Nuclear Medicine
Amsterdam Gastroenterology Endocrinology Metabolism
Amsterdam institute for Infection and Immunity
Amsterdam Public Health
Epidemiology and Data Science
Source :
CCGrid 2010 : 10th IEEE/ACM International Conference on Cluster, Cloud and Grid Computing : 17-20 May, Melbourne, Australia, 733-738, STARTPAGE=733;ENDPAGE=738;TITLE=CCGrid 2010 : 10th IEEE/ACM International Conference on Cluster, Cloud and Grid Computing : 17-20 May, Melbourne, Australia, CCGRID
Publication Year :
2010
Publisher :
IEEE Computer Society, 2010.

Abstract

Diffusion Tensor MRI (DTI) is a rather recent image acquisition modality that can help identify disease processes in nerve bundles in the brain. Due to the large and complex nature of such data, its analysis requires new and sophisticated pipelines that are more efficiently executed within a grid environment. We present our progress over the past four years in the development and porting of the DTI analysis pipeline to grids. Starting with simple jobs submitted from the command-line, we moved towards a workflow-based implementation and finally into a web service that can be accessed via web browsers by end-users. The analysis algorithms evolved from basic to state-of-the-art, currently enabling the automatic calculation of a population-specific ‘atlas’ where even complex brain regions are described in an anatomically correct way. Performance statistics show a clear improvement over the years, representing a mutual benefit from both a technology push and application pull.

Details

Language :
English
Database :
OpenAIRE
Journal :
CCGrid 2010 : 10th IEEE/ACM International Conference on Cluster, Cloud and Grid Computing : 17-20 May, Melbourne, Australia, 733-738, STARTPAGE=733;ENDPAGE=738;TITLE=CCGrid 2010 : 10th IEEE/ACM International Conference on Cluster, Cloud and Grid Computing : 17-20 May, Melbourne, Australia, CCGRID
Accession number :
edsair.doi.dedup.....0df9bcdf2c945fa9d72bdfa0a8543b59