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Fundamental principles of data assimilation underlying the Verdandi library: applications to biophysical model personalization within euHeart

Authors :
Dominique Chapelle
Philippe Moireau
Vivien Mallet
Marc Fragu
Modeling, analysis and control in computational structural dynamics (MACS)
Inria Saclay - Ile de France
Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)
Mathematical and Mechanical Modeling with Data Interaction in Simulations for Medicine (M3DISIM)
Laboratoire de mécanique des solides (LMS)
École polytechnique (X)-Mines Paris - PSL (École nationale supérieure des mines de Paris)
Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS)-École polytechnique (X)-Mines Paris - PSL (École nationale supérieure des mines de Paris)
Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS)-Inria Saclay - Ile de France
Centre d'Enseignement et de Recherche en Environnement Atmosphérique (CEREA)
École des Ponts ParisTech (ENPC)-EDF R&D (EDF R&D)
EDF (EDF)-EDF (EDF)
Coupling environmental data and simulation models for software integration (Clime)
Inria Paris-Rocquencourt
European Project: 224495,ICT,FP7-ICT-2007-2,EUHEART(2008)
École polytechnique (X)-MINES ParisTech - École nationale supérieure des mines de Paris
Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS)-École polytechnique (X)-MINES ParisTech - École nationale supérieure des mines de Paris
Source :
Medical and Biological Engineering and Computing, Medical and Biological Engineering and Computing, 2013, 51, pp.1221-1233. ⟨10.1007/s11517-012-0969-6⟩, Medical and Biological Engineering and Computing, Springer Verlag, 2013, 51, pp.1221-1233. ⟨10.1007/s11517-012-0969-6⟩
Publication Year :
2013
Publisher :
HAL CCSD, 2013.

Abstract

International audience We present the fundamental principles of data assimilation underlying the Verdandi library, and how they are articulated with the modular architecture of the library. This translates -- in particular -- into the definition of standardized interfaces through which the data assimilation library interoperates with the model simulation software and the so-called observation manager. We also survey various examples of data assimilation applied to the personalization of biophysical models, in particular for cardiac modeling applications within the euHeart European project. This illustrates the power of data assimilation concepts in such novel applications, with tremendous potential in clinical diagnosis assistance.

Details

Language :
English
ISSN :
01400118 and 17410444
Database :
OpenAIRE
Journal :
Medical and Biological Engineering and Computing, Medical and Biological Engineering and Computing, 2013, 51, pp.1221-1233. ⟨10.1007/s11517-012-0969-6⟩, Medical and Biological Engineering and Computing, Springer Verlag, 2013, 51, pp.1221-1233. ⟨10.1007/s11517-012-0969-6⟩
Accession number :
edsair.doi.dedup.....0fcf77c1c9e064187fb25650089e12c3
Full Text :
https://doi.org/10.1007/s11517-012-0969-6⟩