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First Dye-Decolorizing Peroxidase from an Ascomycetous Fungus Secreted by Xylaria grammica
- Source :
- Biomolecules, Vol 11, Iss 1391, p 1391 (2021), Biomolecules, Volume 11, Issue 9
- Publication Year :
- 2021
- Publisher :
- MDPI AG, 2021.
-
Abstract
- Background: Fungal DyP-type peroxidases have so far been described exclusively for basidiomycetes. Moreover, peroxidases from ascomycetes that oxidize Mn2+ ions are yet not known. Methods: We describe here the physicochemical, biocatalytic, and molecular characterization of a DyP-type peroxidase (DyP, EC 1.11.1.19) from an ascomycetous fungus. Results: The enzyme oxidizes classic peroxidase substrates such as 2,6-DMP but also veratryl alcohol and notably Mn2+ to Mn3+ ions, suggesting a physiological function of this DyP in lignin modification. The KM value (49 µM) indicates that Mn2+ ions bind with high affinity to the XgrDyP protein but their subsequent oxidation into reactive Mn3+ proceeds with moderate efficiency compared to MnPs and VPs. Mn2+ oxidation was most effective at an acidic pH (between 4.0 and 5.0) and a hypothetical surface exposed an Mn2+ binding site comprising three acidic amino acids (two aspartates and one glutamate) could be localized within the hypothetical XgrDyP structure. The oxidation of Mn2+ ions is seemingly supported by four aromatic amino acids that mediate an electron transfer from the surface to the heme center. Conclusions: Our findings shed new light on the possible involvement of DyP-type peroxidases in lignocellulose degradation, especially by fungi that lack prototypical ligninolytic class II peroxidases.
- Subjects :
- Models, Molecular
Time Factors
Stereochemistry
Color
Mn2+ oxidation
Biochemistry
Microbiology
Article
Xylaria grammica
chemistry.chemical_compound
Electron transfer
Ascomycota
Aromatic amino acids
Lignin
dye-decolorizing peroxidase
Binding site
Coloring Agents
Molecular Biology
Heme
Phylogeny
Dye decolorizing peroxidase
chemistry.chemical_classification
Mn2+ binding site
Likelihood Functions
Manganese
Binding Sites
biology
Chemistry
Hydrogen-Ion Concentration
ascomycete
QR1-502
Kinetics
Enzyme
Peroxidases
biology.protein
Spectrophotometry, Ultraviolet
Extracellular Space
Oxidation-Reduction
Peroxidase
Subjects
Details
- Language :
- English
- Volume :
- 11
- Issue :
- 1391
- Database :
- OpenAIRE
- Journal :
- Biomolecules
- Accession number :
- edsair.doi.dedup.....1046da663d8792cd8129d0e26bf7f85e