Back to Search
Start Over
First de novo draft genome sequence of Oryza coarctata, the only halophytic species in the genus Oryza
- Source :
- F1000Research
- Publication Year :
- 2017
- Publisher :
- F1000 Research Ltd, 2017.
-
Abstract
- Oryza coarctata plants, collected from Sundarban delta of West Bengal, India, have been used in the present study to generate draft genome sequences, employing the hybrid genome assembly with Illumina reads and third generation Oxford Nanopore sequencing technology. We report for the first time that more than 85.71 % of the genome coverage and the data have been deposited in NCBI SRA, with BioProject ID PRJNA396417.
- Subjects :
- Nanopore
0106 biological sciences
0301 basic medicine
Bioinformatics
Halophyte
Salt stress
Sequence assembly
Hybrid genome assembly
Wild Oryza
Data Note
Oryza
01 natural sciences
Genome
General Biochemistry, Genetics and Molecular Biology
03 medical and health sciences
Genus
General Pharmacology, Toxicology and Pharmaceutics
Whole genome sequencing
Genetics
Genome assembly
General Immunology and Microbiology
biology
Articles
Genomics
General Medicine
Abiotic stress
biology.organism_classification
030104 developmental biology
NGS
Nanopore sequencing
010606 plant biology & botany
Subjects
Details
- ISSN :
- 20461402
- Volume :
- 6
- Database :
- OpenAIRE
- Journal :
- F1000Research
- Accession number :
- edsair.doi.dedup.....12181bd21c760f2f3ade19953d31d29d