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Granulosicoccus undariae sp. nov., a member of the family Granulosicoccaceae isolated from a brown algae reservoir and emended description of the genus Granulosicoccus
- Source :
- Antonie van Leeuwenhoek. 106:845-852
- Publication Year :
- 2014
- Publisher :
- Springer Science and Business Media LLC, 2014.
-
Abstract
- A Gram-stain-negative, aerobic, non-flagellated and coccoid bacterial strain, W-BA3T, which was isolated from a brown algae reservoir in Wando of South Korea, was characterized taxonomically. Strain W-BA3T was found to grow optimally at 30 °C, at pH 7.0–8.0 and in presence of 2.0 % (w/v) NaCl. In the neighbour-joining phylogenetic tree based on 16S rRNA gene sequences, strain W-BA3T clustered with the type strains of Granulosicoccus antarcticus and Granulosicoccus coccoides, with which it exhibited sequence similarity values of 98.4–99.3 %. Sequence similarity values of strain W-BA3T to the type strains of the other recognized species were less than 90.2 %. Strain W-BA3T was found to contain Q-8 as the predominant ubiquinone and summed feature 3 (C16:1 ω7c and/or C16:1 ω6c), C18:1 ω7c and C16:0 as the major fatty acids. The major polar lipids of strain W-BA3T, which were identified as phosphatidylethanolamine and phosphatidylglycerol, were similar to those of the type strains of G. antarcticus and G. coccoides. The DNA G+C content of strain W-BA3T was 56.0 mol % and its mean DNA–DNA relatedness values with the type strains of G. coccoides and G. antarcticus were 27 and 17 %, respectively. Differential phenotypic properties, together with the phylogenetic and genetic distinctiveness, demonstrated that strain W-BA3T is separated from the two Granulosicoccus species. On the basis of the data presented, strain W-BA3T is considered to represent a novel species of the genus Granulosicoccus, for which the name Granulosicoccus undariae sp. nov. is proposed. The type strain is W-BA3T (=KCTC 42134T = NBRC 110411T). An emended description of the genus Granulosicoccus is also proposed.
- Subjects :
- DNA, Bacterial
Sequence analysis
Molecular Sequence Data
Sodium Chloride
Biology
Phaeophyta
DNA, Ribosomal
Microbiology
Cytosol
Phylogenetics
Genus
RNA, Ribosomal, 16S
Botany
Cluster Analysis
Molecular Biology
Phospholipids
Phylogeny
Base Composition
Korea
Phylogenetic tree
Strain (chemistry)
Fatty Acids
Quinones
Temperature
Nucleic Acid Hybridization
Sequence Analysis, DNA
General Medicine
Hydrogen-Ion Concentration
Ribosomal RNA
biology.organism_classification
16S ribosomal RNA
Aerobiosis
Bacterial Typing Techniques
Brown algae
Water Microbiology
Gammaproteobacteria
Subjects
Details
- ISSN :
- 15729699 and 00036072
- Volume :
- 106
- Database :
- OpenAIRE
- Journal :
- Antonie van Leeuwenhoek
- Accession number :
- edsair.doi.dedup.....1384c36b5a223c62011f7292875ee38a
- Full Text :
- https://doi.org/10.1007/s10482-014-0254-9