Assessing genetic diversity and phylogeographic structure of duck (Anas platyrhynchos) in Nigeria using mitochondrial DNA D-loop sequences

In this study, the maternal genetic diversity and phylogenetic relationship of Nigerian duck populations were assessed. A total of 591 base pair fragment of the mitochondrial DNA (mtDNA) D-loop region of 87 indigenous ducks from two populations in Nigeria were analyzed. Seven haplotypes and 70 polymorphic sites were identified. The mean haplotypic and nucleotide diversity were found to be 0.381±0.058 and 0.315±0.155 respectively. The phylogeny revealed two divergent haplotype clades, suggesting two possible maternal lineage in Nigerian duck population, with the most commonly shared haplotype belonging to Mallard ducks ( Anas platyrhynchos ). Genetic variation within and between populations accounted for 63.32% and 36.68% of the total genetic variation respectively. This study concluded that there was relatively high genetic diversity and differentiation, thus, this information will probably pave way for further evaluation studies, preservation and improvement of Nigerian ducks as genetic resources. Keywords : Genetic Diversity, MtDNA, Nigerian duck, phylogeny