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Identification of a 15 DNA Damage Repair-Related Gene Signature as a Prognostic Predictor for Lung Adenocarcinoma
- Source :
- Combinatorial Chemistry & High Throughput Screening. 25:1437-1449
- Publication Year :
- 2022
- Publisher :
- Bentham Science Publishers Ltd., 2022.
-
Abstract
- Background: Lung adenocarcinoma (LUAD) is a common malignancy with a poor prognosis due to the lack of predictive markers. DNA damage repair (DDR)-related genes are closely related to cancer progression and treatment. Introduction: To identify a reliable DDR-related gene signature as an independent predictor of LUAD. Methods: DDR-related genes were obtained using combined analysis of TCGA-LUAD data and literature information, followed by the identification of DDR-related prognostic genes. The DDRrelated molecular subtypes were then screened, followed by Kaplan-Meier analysis, feature gene identification, and pathway enrichment analysis of each subtype. Moreover, Cox and LASSO regression analyses were performed for the feature genes of each subtype to construct a prognostic model. The clinical utility of the prognostic model was confirmed using the validation dataset GSE72094 and nomogram analysis. Results: Eight DDR-related prognostic genes were identified from 31 DDR-related genes. Using consensus cluster analysis, three molecular subtypes were screened. Cluster2 had the best prognosis, while cluster3 had the worst. Compared to cluster2, clusters 1 and 3 consisted of more stage3 - 4, T2-T4, male, and older samples. The feature genes of clusters1, 2, and 3 were mainly enriched in the cell cycle, arachidonic acid metabolism, and ribosomes. Furthermore, a 15-feature gene signature was identified for improving the prognosis of LUAD patients. Conclusion: The 15 DDR-related feature gene signature is an independent and powerful prognostic biomarker for LUAD that may improve risk classification and provide supplementary information for a more accurate evaluation and personalized treatment.
- Subjects :
- Male
Lung Neoplasms
DNA repair
Organic Chemistry
Cancer
Adenocarcinoma of Lung
Kaplan-Meier Estimate
General Medicine
Computational biology
Cell cycle
Gene signature
Biology
Nomogram
Prognosis
medicine.disease
Computer Science Applications
Transcriptome
Drug Discovery
medicine
Humans
Adenocarcinoma
Gene
DNA Damage
Subjects
Details
- ISSN :
- 13862073
- Volume :
- 25
- Database :
- OpenAIRE
- Journal :
- Combinatorial Chemistry & High Throughput Screening
- Accession number :
- edsair.doi.dedup.....1897c549cbb957cc519b06e8648557da