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The Sequenced Angiosperm Genomes and Genome Databases
- Source :
- Frontiers in Plant Science, Vol 9 (2018), Frontiers in Plant Science
- Publication Year :
- 2018
- Publisher :
- Frontiers Media SA, 2018.
-
Abstract
- Angiosperms, the flowering plants, provide the essential resources for human life, such as food, energy, oxygen, and materials. They also promoted the evolution of human, animals, and the planet earth. Despite the numerous advances in genome reports or sequencing technologies, no review covers all the released angiosperm genomes and the genome databases for data sharing. Based on the rapid advances and innovations in the database reconstruction in the last few years, here we provide a comprehensive review for three major types of angiosperm genome databases, including databases for a single species, for a specific angiosperm clade, and for multiple angiosperm species. The scope, tools, and data of each type of databases and their features are concisely discussed. The genome databases for a single species or a clade of species are especially popular for specific group of researchers, while a timely-updated comprehensive database is more powerful for address of major scientific mysteries at the genome scale. Considering the low coverage of flowering plants in any available database, we propose construction of a comprehensive database to facilitate large-scale comparative studies of angiosperm genomes and to promote the collaborative studies of important questions in plant biology.
- Subjects :
- 0106 biological sciences
0301 basic medicine
data sharing
genome database
Genome scale
angiosperm genomes
Genomics
Review
comparative genomics
Plant Science
lcsh:Plant culture
Biology
computer.software_genre
01 natural sciences
Genome
03 medical and health sciences
Type (biology)
Single species
big data
lcsh:SB1-1110
Clade
Comparative genomics
Database
fungi
food and beverages
Data sharing
030104 developmental biology
computer
010606 plant biology & botany
Subjects
Details
- ISSN :
- 1664462X
- Volume :
- 9
- Database :
- OpenAIRE
- Journal :
- Frontiers in Plant Science
- Accession number :
- edsair.doi.dedup.....18a8a8f7eb69d9db5d84fe7116ed80dd
- Full Text :
- https://doi.org/10.3389/fpls.2018.00418