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Maintenance of native-like protein dynamics may not be required for engineering functional proteins

Authors :
Nicolas Doucet
Sophie M. C. Gobeil
Joelle N. Pelletier
Jaeok Park
Donald Gagné
Christopher M. Clouthier
Albert M. Berghuis
Université Laval [Québec] (ULaval)
Université de Montréal (UdeM)
McGill University = Université McGill [Montréal, Canada]
Institut Armand Frappier (INRS-IAF)
Institut National de la Recherche Scientifique [Québec] (INRS)-Réseau International des Instituts Pasteur (RIIP)
Center for green chemistry and catalysis (CCVC)
This work was supported by National Sciences and Engineering Research Council of Canada Discovery Grants Program—Individual #227853 (to J.N.P.) and #402623 (to N.D.) and by Canadian Institutes of Health Research Grant MOP-13107 (to A.M.B.).
Source :
Chemistry and Biology, Chemistry and Biology, Elsevier, 2014, 21 (10), pp.1330-1340. ⟨10.1016/j.chembiol.2014.07.016⟩
Publication Year :
2014
Publisher :
HAL CCSD, 2014.

Abstract

International audience; Proteins are dynamic systems, and understanding dynamics is critical for fully understanding protein function. Therefore, the question of whether laboratory engineering has an impact on protein dynamics is of general interest. Here, we demonstrate that two homologous, naturally evolved enzymes with high degrees of structural and functional conservation also exhibit conserved dynamics. Their similar set of slow timescale dynamics is highly restricted, consistent with evolutionary conservation of a functionally important feature. However, we also show that dynamics of a laboratory-engineered chimeric enzyme obtained by recombination of the two homologs exhibits striking difference on the millisecond timescale, despite function and high-resolution crystal structure (1.05 Å) being conserved. The laboratory-engineered chimera is thus functionally tolerant to modified dynamics on the timescale of catalytic turnover. Tolerance to dynamic variation implies that maintenance of native-like protein dynamics may not be required when engineering functional proteins.

Details

Language :
English
ISSN :
10745521
Database :
OpenAIRE
Journal :
Chemistry and Biology, Chemistry and Biology, Elsevier, 2014, 21 (10), pp.1330-1340. ⟨10.1016/j.chembiol.2014.07.016⟩
Accession number :
edsair.doi.dedup.....1ba5f695813acb7fee43b56e99069663