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Maintenance of native-like protein dynamics may not be required for engineering functional proteins
- Source :
- Chemistry and Biology, Chemistry and Biology, Elsevier, 2014, 21 (10), pp.1330-1340. ⟨10.1016/j.chembiol.2014.07.016⟩
- Publication Year :
- 2014
- Publisher :
- HAL CCSD, 2014.
-
Abstract
- International audience; Proteins are dynamic systems, and understanding dynamics is critical for fully understanding protein function. Therefore, the question of whether laboratory engineering has an impact on protein dynamics is of general interest. Here, we demonstrate that two homologous, naturally evolved enzymes with high degrees of structural and functional conservation also exhibit conserved dynamics. Their similar set of slow timescale dynamics is highly restricted, consistent with evolutionary conservation of a functionally important feature. However, we also show that dynamics of a laboratory-engineered chimeric enzyme obtained by recombination of the two homologs exhibits striking difference on the millisecond timescale, despite function and high-resolution crystal structure (1.05 Å) being conserved. The laboratory-engineered chimera is thus functionally tolerant to modified dynamics on the timescale of catalytic turnover. Tolerance to dynamic variation implies that maintenance of native-like protein dynamics may not be required when engineering functional proteins.
- Subjects :
- [SDV.BIO]Life Sciences [q-bio]/Biotechnology
General interest
Recombinant Fusion Proteins
[SDV]Life Sciences [q-bio]
Clinical Biochemistry
Chimeric enzyme
MESH: Catalytic Domain
MESH: Protein Structure, Secondary
MESH: beta-Lactamases
Computational biology
Biology
Molecular Dynamics Simulation
Crystallography, X-Ray
Protein Engineering
Biochemistry
Protein Structure, Secondary
beta-Lactamases
Conserved sequence
Chimera (genetics)
[SDV.MHEP.MI]Life Sciences [q-bio]/Human health and pathology/Infectious diseases
Catalytic Domain
Drug Discovery
Hydrolase
MESH: Nuclear Magnetic Resonance, Biomolecular
MESH: Recombinant Fusion Proteins
[CHIM]Chemical Sciences
MESH: Molecular Dynamics Simulation
MESH: Proteins
Molecular Biology
Nuclear Magnetic Resonance, Biomolecular
Pharmacology
Genetics
Protein function
Nitrogen Isotopes
Protein dynamics
Proteins
General Medicine
MESH: Crystallography, X-Ray
MESH: Protein Engineering
Molecular Medicine
Recombination
MESH: Nitrogen Isotopes
Subjects
Details
- Language :
- English
- ISSN :
- 10745521
- Database :
- OpenAIRE
- Journal :
- Chemistry and Biology, Chemistry and Biology, Elsevier, 2014, 21 (10), pp.1330-1340. ⟨10.1016/j.chembiol.2014.07.016⟩
- Accession number :
- edsair.doi.dedup.....1ba5f695813acb7fee43b56e99069663