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Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes

Authors :
Catherine Feuillet
Raphael Flores
Tzion Fahima
Marco Maccaferri
Delphine Steinbach
Hadi Quesneville
Silvio Salvi
Umar Masood Quraishi
Jérôme Salse
Jaroslav Doležel
Michael Alaux
Beat Keller
Caroline Pont
Hikmet Budak
Séverine Foucrier
Sébastien Guizard
Florent Murat
Yannick Bidet
University of Zurich
Salse, Jérôme
Génétique Diversité et Ecophysiologie des Céréales (GDEC)
Institut National de la Recherche Agronomique (INRA)-Université Blaise Pascal - Clermont-Ferrand 2 (UBP)
Unité de Recherche Génomique Info (URGI)
Institut National de la Recherche Agronomique (INRA)
Plateforme GINA
Université de Clermont
Centre of the Region Hana for Biotechnological and Agricultural Research
Institute of Experimental Botany of the Czech Academy of Sciences (IEB / CAS)
Czech Academy of Sciences [Prague] (CAS)-Czech Academy of Sciences [Prague] (CAS)
Departement of Evolutionary and Environmental Biology
University of Haifa [Haifa]
Faculty of Engineering and Natural Sciences
Sabanci University [Istanbul]
Institut de Biologie des Plantes
Universität Zürich [Zürich] = University of Zurich (UZH)
DiSTA- Agronomia
Alma Mater Studiorum Università di Bologna [Bologna] (UNIBO)
DiSTA-Agronomia
INRA (Genetique et Amelioration des Plantes' reference: 'Appel d'Offre AIP Bioressources')
Auvergne region (Pole de competitivite: Cereales Vallee reference: programme 'Semences de Demain')
Agence Nationale de la Recherche (Programs ANRjc-PaleoCereal) [ANR-09-JCJC-0058-01]
Agence Nationale de la Recherche (programme ANR Blanc-PAGE) [ANR-2011-BSV6-00801]
European 7th Framework Programme (programme 'TRITICEAE GENOME') [FP7-212019]
Institute of Experimental Botany
Universität Zürich [Zürich] (UZH)
Università di Bologna [Bologna] (UNIBO)
Université Blaise Pascal - Clermont-Ferrand 2 (UBP)-Institut National de la Recherche Agronomique (INRA)
Caroline Pont
Florent Murat
Sébastien Guizard
Raphael Flore
Séverine Foucrier
Yannick Bidet
Umar Masood Quraishi
Michael Alaux
Jaroslav Doležel
Tzion Fahima
Hikmet Budak
Beat Keller
Silvio Salvi
Marco Maccaferri
Delphine Steinbach
Catherine Feuillet
Hadi Quesneville
Jérôme Salse
Source :
Plant Journal, Plant Journal, 2013, pp.1-29. ⟨10.1111/tpj.12366⟩, Plant Journal, Wiley, 2013, pp.1-29. ⟨10.1111/tpj.12366⟩, Plant Journal, 1-29. (2013)
Publication Year :
2013
Publisher :
Wiley, 2013.

Abstract

édition online; Bread wheat derives from a grass ancestor structured in 7 protochromosomes followed by a paleotetraploidization to reach a 12 chromosomes intermediate and a neohexaploidization (involving subgenomes A, B and D) event that finally shaped the 21 modern chromosomes. Insights into wheat syntenome in sequencing COS (Conserved Orthologous Set) genes unravelled differences in genomic structure (such as gene conservation and diversity) and genetical landscape (such as recombination pattern) between ancestral as well as recent duplicated blocks. Contrasted evolutionary plasticity is observed where the B subgenome appears more sensitive (i.e. plastic) in contrast to A as dominant (i.e. stable) in response to the neotetraploidization and D subgenome as supradominant (i.e. pivotal) in response to the neohexaploidization event. Finally, the wheat syntenome, delivered through a public web interface PlantSyntenyViewer at http://urgi.versailles.inra.fr/synteny-wheat, can be considered as a guide for accelerated dissection of major agronomical traits in wheat. This article is protected by copyright. All rights reserved.

Details

ISSN :
09607412 and 1365313X
Volume :
76
Database :
OpenAIRE
Journal :
The Plant Journal
Accession number :
edsair.doi.dedup.....202ee1b881c49087298daff042707e52