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SIMONE: a realistic neural network simulator to reproduce MEA-based recordings
- Source :
- IEEE Transactions on Neural Systems and Rehabilitation Engineering, IEEE Transactions on Neural Systems and Rehabilitation Engineering, 2008, 16 (2), pp.149-60. ⟨10.1109/TNSRE.2007.914467⟩, IEEE Transactions on Neural Systems and Rehabilitation Engineering, Institute of Electrical and Electronics Engineers, 2008, 16 (2), pp.149-60. 〈10.1109/TNSRE.2007.914467〉, IEEE Transactions on Neural Systems and Rehabilitation Engineering, Institute of Electrical and Electronics Engineers, 2008, 16 (2), pp.149-60. ⟨10.1109/TNSRE.2007.914467⟩, IEEE Transactions on Neural Systems and Rehabilitation Engineering, Institute of Electrical and Electronics Engineers, 2008, 16 (2), pp.149--160
- Publication Year :
- 2008
- Publisher :
- HAL CCSD, 2008.
-
Abstract
- International audience; Contemporary multielectrode arrays (MEAs) used to record extracellular activity from neural tissues can deliver data at rates on the order of 100 Mbps. Such rates require efficient data compression and/or preprocessing algorithms implemented on an application specific integrated circuit (ASIC) close to the MEA. We present SIMONE (Statistical sIMulation Of Neuronal networks Engine), a versatile simulation tool whose parameters can be either fixed or defined by a probability distribution. We validated our tool by simulating data recorded from the first olfactory relay of an insect. Different key aspects make this tool suitable for testing the robustness and accuracy of neural signal processing algorithms (such as the detection, alignment, and classification of spikes). For instance, most of the parameters can be defined by a probabilistic distribution, then tens of simulations may be obtained from the same scenario. This is especially useful when validating the robustness of the processing algorithm. Moreover, the number of active cells and the exact firing activity of each one of them is perfectly known, which provides an easy way to test accuracy.
- Subjects :
- MESH: Microelectrodes
Computer science
MESH: Neurons
Action Potentials
Synaptic Transmission
American cockroach
law.invention
0302 clinical medicine
[INFO.INFO-TS]Computer Science [cs]/Signal and Image Processing
Application-specific integrated circuit
Relay
law
SpikeOMatic
Preprocessor
SIMONE
[ SDV.BIBS ] Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]
MESH : Algorithms
MESH: Action Potentials
Neurons
0303 health sciences
MESH : Synaptic Transmission
Artificial neural network
General Neuroscience
Rehabilitation
simulation
[SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]
MESH : Computer Simulation
Spike sorting
[INFO.INFO-TI]Computer Science [cs]/Image Processing [eess.IV]
Probability distribution
[SDV.IB]Life Sciences [q-bio]/Bioengineering
Algorithm
[SPI.SIGNAL]Engineering Sciences [physics]/Signal and Image processing
Algorithms
Data compression
noise
Models, Neurological
Biomedical Engineering
extracellular
MESH: Algorithms
spike sorting
MESH : Neurons
03 medical and health sciences
MESH: Computer Simulation
Robustness (computer science)
MESH : Action Potentials
MESH: Models, Neurological
[ INFO.INFO-BI ] Computer Science [cs]/Bioinformatics [q-bio.QM]
spike detection
[INFO.INFO-IM]Computer Science [cs]/Medical Imaging
Internal Medicine
Electronic engineering
MESH: Synaptic Transmission
MESH : Models, Neurological
Computer Simulation
integrate-and-fire
030304 developmental biology
[INFO.INFO-MO]Computer Science [cs]/Modeling and Simulation
MESH: Nerve Net
MESH : Microelectrodes
MESH : Nerve Net
Nerve Net
[INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]
multielectrode array (MEA)
Microelectrodes
030217 neurology & neurosurgery
Subjects
Details
- Language :
- English
- ISSN :
- 15344320 and 15580210
- Database :
- OpenAIRE
- Journal :
- IEEE Transactions on Neural Systems and Rehabilitation Engineering, IEEE Transactions on Neural Systems and Rehabilitation Engineering, 2008, 16 (2), pp.149-60. ⟨10.1109/TNSRE.2007.914467⟩, IEEE Transactions on Neural Systems and Rehabilitation Engineering, Institute of Electrical and Electronics Engineers, 2008, 16 (2), pp.149-60. 〈10.1109/TNSRE.2007.914467〉, IEEE Transactions on Neural Systems and Rehabilitation Engineering, Institute of Electrical and Electronics Engineers, 2008, 16 (2), pp.149-60. ⟨10.1109/TNSRE.2007.914467⟩, IEEE Transactions on Neural Systems and Rehabilitation Engineering, Institute of Electrical and Electronics Engineers, 2008, 16 (2), pp.149--160
- Accession number :
- edsair.doi.dedup.....21d23a18b0d2c96aea3dd799e572ff4f
- Full Text :
- https://doi.org/10.1109/TNSRE.2007.914467⟩