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A review of the deterministic and diffusion approximations for stochastic chemical reaction networks

Authors :
Thomas Jaki
Enrico Bibbona
Pavel Mozgunov
András Horváth
Marco Beccuti
Roberta Sirovich
Source :
Reaction Kinetics, Mechanisms and Catalysis
Publication Year :
2018
Publisher :
Springer Science and Business Media LLC, 2018.

Abstract

This work reviews deterministic and diffusion approximations of the stochastic chemical reaction networks and explains their applications. We discuss the added value the diffusion approximation provides for systems with different phenomena, such as a deficiency and a bistability. It is advocated that the diffusion approximation can be considered as an alternative theoretical approach to study the reaction networks rather than a simulation shortcut. We discuss two examples in which the diffusion approximation is able to catch qualitative properties of reaction networks that the deterministic model misses. We provide an explicit construction of the original process and the diffusion approximation such that the distance between their trajectories is controlled and demonstrate this construction for the examples. We also discuss the limitations and potential directions of the developments.

Details

ISSN :
18785204 and 18785190
Volume :
123
Database :
OpenAIRE
Journal :
Reaction Kinetics, Mechanisms and Catalysis
Accession number :
edsair.doi.dedup.....28c19239d4b3ae5e3f9305b64ffd6518
Full Text :
https://doi.org/10.1007/s11144-018-1351-y