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Complete genome sequence and taxonomic position of anguillid herpesvirus 1
- Source :
- Journal of General Virology 91 (2010) 4, Journal of General Virology, 91(4), 880-887
- Publication Year :
- 2010
-
Abstract
- Eel herpesvirus or anguillid herpesvirus 1 (AngHV1) frequently causes disease in freshwater eels. The complete genome sequence of AngHV1 and its taxonomic position within the family Alloherpesviridae were determined. Shotgun sequencing revealed a 249 kbp genome including an 11 kbp terminal direct repeat that contains 7 of the 136 predicted protein-coding open reading frames. Twelve of these genes are conserved among other members of the family Alloherpesviridae and another 28 genes have clear homologues in cyprinid herpesvirus 3. Phylogenetic analyses based on amino acid sequences of five conserved genes, including the ATPase subunit of the terminase, confirm the position of AngHV1 within the family Alloherpesviridae, where it is most closely related to the cyprinid herpesviruses. Our analyses support a recent proposal to subdivide the family Alloherpesviridae into two sister clades, one containing AngHV1 and the cyprinid herpesviruses and the other containing Ictalurid herpesvirus 1 and the ranid herpesviruses.
- Subjects :
- japonica
taiwan
Epidemiology
Bioinformatica & Diermodellen
Cyprinid herpesvirus 3
viruses
ved/biology.organism_classification_rank.species
Molecular Sequence Data
european eel
Genome, Viral
virus
Genome
hva
BIOS Applied Bioinformatics
Open Reading Frames
Phylogenetics
Virology
Bio-informatics & Animal models
evolution
Animals
regions
Epidemiology, Bio-informatics & Animal models
Herpesviridae
Phylogeny
Host Pathogen Interaction & Diagnostics
Epidemiologie
Whole genome sequencing
Genetics
Eels
biology
Phylogenetic tree
Base Sequence
ved/biology
Shotgun sequencing
Bacteriologie
Nucleic acid sequence
Bacteriology
Bacteriology, Host Pathogen Interaction & Diagnostics
japanese eels
biology.organism_classification
Host Pathogen Interactie & Diagnostiek
Virology & Molecular Biology
Virologie & Moleculaire Biologie
dna-polymerase gene
Alloherpesviridae
Epidemiologie, Bioinformatica & Diermodellen
Bacteriologie, Host Pathogen Interactie & Diagnostiek
koi
Subjects
Details
- Language :
- English
- ISSN :
- 00221317
- Database :
- OpenAIRE
- Journal :
- Journal of General Virology 91 (2010) 4, Journal of General Virology, 91(4), 880-887
- Accession number :
- edsair.doi.dedup.....28cae9c5ad1a9d1123aab521847064fe