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Essentiality is an emergent property of metabolic network wiring
- Source :
- FEBS letters. 581(13)
- Publication Year :
- 2007
-
Abstract
- The topological bases of essentiality in the yeast metabolic network from the perspective of double mutations are the subject of this study. A strong relationship between essentiality and the ‘missing alternative’ topological property is shown in terms of the presence of multiple genes synthesizing the same enzyme, supplementary enzymes participating in the same metabolic reaction, and availability of other pathways in the graph connecting the separated nodes after the knockouts.We demonstrate that the ‘missing alternative’ paradigm is sufficient to explain the generation of essentiality for double mutations in which each single deleted element is non-essential.
- Subjects :
- Topological property
Models, Molecular
Property (philosophy)
Saccharomyces cerevisiae Proteins
Protein Conformation
Systems biology
Genes, Fungal
Biophysics
Metabolic network
Saccharomyces cerevisiae
Biology
Biochemistry
double mutants
phenotype/genotype relations
systems biology
yeast
Structural Biology
Genetics
Phenotype/genotype relations
Amino Acid Sequence
Molecular Biology
Gene
Genes, Essential
Models, Genetic
Cell Biology
Yeast
Kinetics
Metabolism
Mutation
Graph (abstract data type)
Double mutants
Nerve Net
Gene Deletion
Subjects
Details
- ISSN :
- 00145793
- Volume :
- 581
- Issue :
- 13
- Database :
- OpenAIRE
- Journal :
- FEBS letters
- Accession number :
- edsair.doi.dedup.....2a14bc3e087ed88c9beccf8737491782