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High-throughput sequencing technologies for plant pest diagnosis: challenges and opportunities

Authors :
Denis Kutnjak
Mike Rott
Baldissera Giovani
Antonio Olmos
Angelantonio Minafra
Pascal Gentit
Brendan Rodoni
Neil Boonham
A. G. Moreira
R.A.A. van der Vlugt
Thierry Candresse
Johanna Santala
Heiko Ziebell
Marcel Westenberg
J. W. Roenhorst
Thierry Wetzel
F. Petter
L. Liefting
Maja Ravnikar
Christina Varveri
Sébastien Massart
Hans J. Maree
Giuseppe Stancanelli
M.K. Nakhla
Ana Belén Ruiz-García
Instituto Valenciano de Investigaciones Agrarias - Institut Valencià d'Investigacions Agraries - Valencian Institute for agricultural Research (IVIA)
Newcastle University [Newcastle]
Biologie du fruit et pathologie (BFP)
Université Bordeaux Segalen - Bordeaux 2-Institut National de la Recherche Agronomique (INRA)-Université Sciences et Technologies - Bordeaux 1
Laboratoire de la Santé des Végétaux
Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES)
European and Mediterranean Plant Protection Organization - Organisation Européenne et Méditerranéenne pour la Protection des Plantes (EPPO)
National Institute of Biology [Ljubljana] (NIB)
Ministry for Primary Industries
Stellenbosch University
Institute for the Sustainable Plant Protection
Partenaires INRAE
International Plant Protection Convention
USDA-ARS : Agricultural Research Service
AgriBio
National Plant Protection Organization (NPPO)
Canadian Food Inspection Agency (CFIA)
Finnish Food Safety Authority Evira
European Food Safety Authority (EFSA)
Wageningen University and Research Centre (WUR)
Benaki Phytopathological Institute
Dienstleistungszentren Landlicher Raum Rheinland-Pfalz (DLR)
Institute for Epidemiology and Pathogen Diagnostics
Julius Kühn-Institut - Federal Research Centre for Cultivated Plants
Université de Liège
Source :
Bulletin OEPP, Bulletin OEPP, 2018, 48 (2), pp.219-224. ⟨10.1111/epp.12472⟩, EPPO Bulletin, 48(2), 219-224, 48 (2018): 219–224. doi:10.1111/epp.12472, info:cnr-pdr/source/autori:Olmos A., Boonham N., Candresse T., Gentit P., Giovani B., Kutnjak D., Liefting L., Maree H.J., Minafra A., Moreira A., Nakhla M.K., Petter F., Ravnikar M., Rodoni B., Roenhorst J.W., Rott M., Ruiz-García A.B., Santala J., Stancanelli G., van der Vlugt R., Varveri C., Westenberg M., Wetzel T., Ziebell H., Massart S./titolo:High-throughput sequencing technologies for plant pest diagnosis: challenges and opportunities/doi:10.1111%2Fepp.12472/rivista:Bulletin OEPP (Print)/anno:2018/pagina_da:219/pagina_a:224/intervallo_pagine:219–224/volume:48, EPPO Bulletin 48 (2018) 2
Publication Year :
2018
Publisher :
HAL CCSD, 2018.

Abstract

UMR BFP - Equipe Virologie; International audience; High-throughput sequencing (HTS) technologies have revolutionized plant pest research and are now raising interest for plant pest diagnostics, with plant virus diagnostics at the forefront of development. However, the application of HTS in plant pest diagnostics raisesimportant challenges that plant health regulators will have to address. Adapted infrastructures, technical guidelines and training are pivotal for further use and adoption of the HTS technologies in the phytosanitary framework.

Details

Language :
English
ISSN :
02508052
Database :
OpenAIRE
Journal :
Bulletin OEPP, Bulletin OEPP, 2018, 48 (2), pp.219-224. ⟨10.1111/epp.12472⟩, EPPO Bulletin, 48(2), 219-224, 48 (2018): 219–224. doi:10.1111/epp.12472, info:cnr-pdr/source/autori:Olmos A., Boonham N., Candresse T., Gentit P., Giovani B., Kutnjak D., Liefting L., Maree H.J., Minafra A., Moreira A., Nakhla M.K., Petter F., Ravnikar M., Rodoni B., Roenhorst J.W., Rott M., Ruiz-García A.B., Santala J., Stancanelli G., van der Vlugt R., Varveri C., Westenberg M., Wetzel T., Ziebell H., Massart S./titolo:High-throughput sequencing technologies for plant pest diagnosis: challenges and opportunities/doi:10.1111%2Fepp.12472/rivista:Bulletin OEPP (Print)/anno:2018/pagina_da:219/pagina_a:224/intervallo_pagine:219–224/volume:48, EPPO Bulletin 48 (2018) 2
Accession number :
edsair.doi.dedup.....2c33d1b548fd5681adb61e63fe14ef03
Full Text :
https://doi.org/10.1111/epp.12472⟩