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Substrate specificity, regiospecificity, and processivity in glycoside hydrolase family 74

Authors :
Mohamed A. Attia
Jathavan Asohan
Alexei Savchenko
Gregory Arnal
Peter J. Stogios
Harry Brumer
Bernard Henrissat
Tatiana Skarina
Alexander Holm Viborg
Laboratoire d'Ingénierie des Systèmes Biologiques et des Procédés (LISBP)
Centre National de la Recherche Scientifique (CNRS)-Institut National des Sciences Appliquées - Toulouse (INSA Toulouse)
Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Institut National de la Recherche Agronomique (INRA)
Department of Biochemistry [University of Toronto]
University of Toronto
University of British Columbia (UBC)
Croissance cellulaire, réparation et régénération tissulaires (CRRET)
Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-Centre National de la Recherche Scientifique (CNRS)
Architecture et fonction des macromolécules biologiques (AFMB)
Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
United States Department of Energy, Office of Biological and Environmental ResearchUnited States Department of Energy (DOE) [DE-AC02-06CH11357]
Savchenko, Alexei
Brumer, Harry
Institut National de la Recherche Agronomique (INRA)-Institut National des Sciences Appliquées - Toulouse (INSA Toulouse)
Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)
Institut National des Sciences Appliquées (INSA)-Université Fédérale Toulouse Midi-Pyrénées-Institut National des Sciences Appliquées (INSA)-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)
Source :
Journal of Biological Chemistry, Journal of Biological Chemistry, American Society for Biochemistry and Molecular Biology, 2019, 294 (36), pp.13233-13247. ⟨10.1074/jbc.RA119.009861⟩, Journal of Biological Chemistry 36 (294), 13233-13247. (2019), Journal of Biological Chemistry, 2019, 294 (36), pp.13233-13247. ⟨10.1074/jbc.RA119.009861⟩
Publication Year :
2019
Publisher :
HAL CCSD, 2019.

Abstract

International audience; Glycoside hydrolase family 74 (GH74) is a historically important family of endo-␤-glucanases. On the basis of early reports of detectable activity on cellulose and soluble cellulose derivatives, GH74 was originally considered to be a "cellulase" family, although more recent studies have generally indicated a high specificity toward the ubiquitous plant cell wall matrix glycan xyloglucan. Previous studies have indicated that GH74 xyloglu-canases differ in backbone cleavage regiospecificities and can adopt three distinct hydrolytic modes of action: exo, endo-dis-sociative, and endo-processive. To improve functional predictions within GH74, here we coupled in-depth biochemical characterization of 17 recombinant proteins with structural biology-based investigations in the context of a comprehensive molecular phylogeny, including all previously characterized family members. Elucidation of four new GH74 tertiary structures , as well as one distantly related dual seven-bladed ␤-propeller protein from a marine bacterium, highlighted key structure-function relationships along protein evolutionary trajectories. We could define five phylogenetic groups, which delineated the mode of action and the regiospecificity of GH74 members. At the extremes, a major group of enzymes diverged to hydrolyze the backbone of xyloglucan nonspecifically with a dissociative mode of action and relaxed backbone regiospecific-ity. In contrast, a sister group of GH74 enzymes has evolved a large hydrophobic platform comprising 10 subsites, which facilitates processivity. Overall, the findings of our study refine our understanding of catalysis in GH74, providing a framework for future experimentation as well as for bioinformatics predictions of sequences emerging from (meta)genomic studies.

Details

Language :
English
ISSN :
00219258 and 1083351X
Database :
OpenAIRE
Journal :
Journal of Biological Chemistry, Journal of Biological Chemistry, American Society for Biochemistry and Molecular Biology, 2019, 294 (36), pp.13233-13247. ⟨10.1074/jbc.RA119.009861⟩, Journal of Biological Chemistry 36 (294), 13233-13247. (2019), Journal of Biological Chemistry, 2019, 294 (36), pp.13233-13247. ⟨10.1074/jbc.RA119.009861⟩
Accession number :
edsair.doi.dedup.....2e765d801c74cfa53138766eeeda1980