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Multigrid-Based Methodology for Implicit Solvation Models in Periodic DFT
- Source :
- RECERCAT (Dipòsit de la Recerca de Catalunya), Recercat. Dipósit de la Recerca de Catalunya, instname
- Publication Year :
- 2016
- Publisher :
- American Chemical Society (ACS), 2016.
-
Abstract
- Continuum solvation models have become a widespread approach for the study of environmental effects in Density Functional Theory (DFT) methods. Adding solvation contributions mainly relies on the solution of the Generalized Poisson Equation (GPE) governing the behavior of the electrostatic potential of a system. Although multigrid methods are especially appropriate for the solution of partial differential equations, up to now, their use is not much extended in DFT-based codes because of their high memory requirements. In this Article, we report the implementation of an accelerated multigrid solver-based approach for the treatment of solvation effects in the Vienna ab initio Simulation Package (VASP). The stated implicit solvation model, named VASP-MGCM (VASP-Multigrid Continuum Model), uses an efficient and transferable algorithm for the product of sparse matrices that highly outperforms serial multigrid solvers. The calculated solvation free energies for a set of molecules, including neutral and ionic species, as well as adsorbed molecules on metallic surfaces, agree with experimental data and with simulation results obtained with other continuum models.
- Subjects :
- Theoretical computer science
Implicit solvation
Solvation
02 engineering and technology
010402 general chemistry
01 natural sciences
Multigrid method
Physics::Atomic and Molecular Clusters
Statistical physics
Physics::Chemical Physics
Physical and Theoretical Chemistry
periodic boundary conditions
multigrid
Sparse matrix
Physics
Partial differential equation
Continuum (topology)
plane wave s
021001 nanoscience & nanotechnology
0104 chemical sciences
Computer Science Applications
Density functional theory
Poisson's equation
0210 nano-technology
Subjects
Details
- ISSN :
- 15499626 and 15499618
- Volume :
- 12
- Database :
- OpenAIRE
- Journal :
- Journal of Chemical Theory and Computation
- Accession number :
- edsair.doi.dedup.....329a41f13e0f70124a8cb06f1b069639
- Full Text :
- https://doi.org/10.1021/acs.jctc.5b00949