Back to Search
Start Over
Actinoplanes sediminis sp. nov., isolated from marine sediment
- Source :
- International Journal of Systematic and Evolutionary Microbiology. 68:71-75
- Publication Year :
- 2018
- Publisher :
- Microbiology Society, 2018.
-
Abstract
- An actinomycete strain M4I47T was isolated from sediment from Megas Gialos, Syros, Greece. The results of phylogenetic analysis of the 16S rRNA gene sequence of M4I47T indicated that the highest similarity was with Actinoplanes atraurantiacus Y16T (98.9 %), Actinoplanes deccanensis IFO 13994T (98.8 %), Actinoplanes digitatis IFO 12512T (98.1 %) and Actinoplanes abujensis A4029T (98.0 %). The cell wall of the novel isolate contained meso-diaminopimelic acid and the whole-cell sugars were xylose, arabinose and glucose. The predominant menaquinones were MK-9(H4), MK-9(H6) and MK-9(H2). The phospholipid profile comprised phosphatidylethanolamine, phosphatidylmethylethanolamine, phosphatidylinositol, phosphatidylinositol mannosides and an unknown phospholipid. The DNA G+C content was 71.5 mol%. Furthermore, a combination of DNA–DNA relatedness and some physiological and biochemical properties indicated that the novel strain could be readily distinguished from the most closely related species. On the basis of these phenotypic and genotypic data, M4I47T represents a novel species of the genus Actinoplanes , for which the name Actinoplanes sediminis sp. nov. is proposed. The type strain is M4I47T (=CCTCC AA 2016022T=DSM 100965T).
- Subjects :
- DNA, Bacterial
0301 basic medicine
Arabinose
Geologic Sediments
Xylose
Diaminopimelic Acid
medicine.disease_cause
Microbiology
Cell wall
03 medical and health sciences
chemistry.chemical_compound
Cell Wall
RNA, Ribosomal, 16S
Actinoplanes atraurantiacus
medicine
Actinoplanes
Phospholipids
Phylogeny
Ecology, Evolution, Behavior and Systematics
Base Composition
Greece
biology
Phylogenetic tree
Strain (chemistry)
Fatty Acids
Nucleic Acid Hybridization
Micromonosporaceae
Vitamin K 2
Sequence Analysis, DNA
General Medicine
biology.organism_classification
16S ribosomal RNA
Bacterial Typing Techniques
030104 developmental biology
chemistry
Biochemistry
Subjects
Details
- ISSN :
- 14665034 and 14665026
- Volume :
- 68
- Database :
- OpenAIRE
- Journal :
- International Journal of Systematic and Evolutionary Microbiology
- Accession number :
- edsair.doi.dedup.....32b3caab5aaccc49fc58e5970520602b
- Full Text :
- https://doi.org/10.1099/ijsem.0.002451