Back to Search
Start Over
The divide–expand–consolidate MP2 scheme goes massively parallel
- Source :
- Kristensen, K, Kjærgaard, T, Høyvik, I-M, Ettenhuber, P, Jørgensen, P, Jansik, B, Reine, S & Jakowski, J 2013, ' The divide–expand–consolidate MP2 scheme goes massively parallel ', Molecular Physics, vol. 111, no. 9-11, pp. 1196-1210 . https://doi.org/10.1080/00268976.2013.783941
- Publication Year :
- 2013
-
Abstract
- For large molecular systems conventional implementations of second order Moller–Plesset (MP2) theory encounter a scaling wall, both memory- and time-wise. We describe how this scaling wall can be removed. We present a massively parallel algorithm for calculating MP2 energies and densities using the divide–expand–consolidate scheme where a calculation on a large system is divided into many small fragment calculations employing local orbital spaces. The resulting algorithm is linear-scaling with system size, exhibits near perfect parallel scalability, removes memory bottlenecks and does not involve any I/O. The algorithm employs three levels of parallelisation combined via a dynamic job distribution scheme. Results on two molecular systems containing 528 and 1056 atoms (4278 and 8556 basis functions) using 47,120 and 94,240 cores are presented. The results demonstrate the scalability of the algorithm both with respect to the number of cores and with respect to system size. The presented algorithm is thus hi...
- Subjects :
- Scheme (programming language)
010304 chemical physics
Computer science
Biophysics
Order (ring theory)
Basis function
010402 general chemistry
Condensed Matter Physics
01 natural sciences
0104 chemical sciences
Computational science
Distribution (mathematics)
0103 physical sciences
Scalability
Linear scale
Physical and Theoretical Chemistry
Molecular Biology
Massively parallel
computer
Scaling
computer.programming_language
Subjects
Details
- Language :
- English
- Database :
- OpenAIRE
- Journal :
- Kristensen, K, Kjærgaard, T, Høyvik, I-M, Ettenhuber, P, Jørgensen, P, Jansik, B, Reine, S & Jakowski, J 2013, ' The divide–expand–consolidate MP2 scheme goes massively parallel ', Molecular Physics, vol. 111, no. 9-11, pp. 1196-1210 . https://doi.org/10.1080/00268976.2013.783941
- Accession number :
- edsair.doi.dedup.....34a97708d85091dee3aa2966fca3e11b
- Full Text :
- https://doi.org/10.1080/00268976.2013.783941