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The divide–expand–consolidate MP2 scheme goes massively parallel

Authors :
Thomas Kjærgaard
Branislav Jansík
Patrick Ettenhuber
Ida-Marie Høyvik
Simen Reine
Poul Jørgensen
Jacek Jakowski
Kasper Kristensen
Source :
Kristensen, K, Kjærgaard, T, Høyvik, I-M, Ettenhuber, P, Jørgensen, P, Jansik, B, Reine, S & Jakowski, J 2013, ' The divide–expand–consolidate MP2 scheme goes massively parallel ', Molecular Physics, vol. 111, no. 9-11, pp. 1196-1210 . https://doi.org/10.1080/00268976.2013.783941
Publication Year :
2013

Abstract

For large molecular systems conventional implementations of second order Moller–Plesset (MP2) theory encounter a scaling wall, both memory- and time-wise. We describe how this scaling wall can be removed. We present a massively parallel algorithm for calculating MP2 energies and densities using the divide–expand–consolidate scheme where a calculation on a large system is divided into many small fragment calculations employing local orbital spaces. The resulting algorithm is linear-scaling with system size, exhibits near perfect parallel scalability, removes memory bottlenecks and does not involve any I/O. The algorithm employs three levels of parallelisation combined via a dynamic job distribution scheme. Results on two molecular systems containing 528 and 1056 atoms (4278 and 8556 basis functions) using 47,120 and 94,240 cores are presented. The results demonstrate the scalability of the algorithm both with respect to the number of cores and with respect to system size. The presented algorithm is thus hi...

Details

Language :
English
Database :
OpenAIRE
Journal :
Kristensen, K, Kjærgaard, T, Høyvik, I-M, Ettenhuber, P, Jørgensen, P, Jansik, B, Reine, S & Jakowski, J 2013, ' The divide–expand–consolidate MP2 scheme goes massively parallel ', Molecular Physics, vol. 111, no. 9-11, pp. 1196-1210 . https://doi.org/10.1080/00268976.2013.783941
Accession number :
edsair.doi.dedup.....34a97708d85091dee3aa2966fca3e11b
Full Text :
https://doi.org/10.1080/00268976.2013.783941