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A Set of Efficient nD NMR Protocols for Resonance Assignments of Intrinsically Disordered Proteins
- Source :
- Chemphyschem : a European journal of chemical physics and physical chemistry. 17(13)
- Publication Year :
- 2016
-
Abstract
- The RF pulse scheme RN[N-CA HEHAHA]NH, which provides a convenient approach to the acquisition of different multidimensional chemical shift correlation NMR spectra leading to backbone resonance assignments, including those of the proline residues of intrinsically disordered proteins (IDPs), is experimentally demonstrated. Depending on the type of correlation data required, the method involves the generation of in-phase ((15) N)(x) magnetisation via different magnetisation transfer pathways such as H→N→CO→N, HA→CA→CO→N, H→N→CA→N and H→CA→N, the subsequent application of (15) N-(13) C(α) heteronuclear Hartmann-Hahn mixing over a period of ≈100 ms, chemical-shift labelling of relevant nuclei before and after the heteronuclear mixing step and amide proton detection in the acquisition dimension. It makes use of the favourable relaxation properties of IDPs and the presence of (1) JCαN and (2) JCαN couplings to achieve efficient correlation of the backbone resonances of each amino acid residue "i" with the backbone amide resonances of residues "i-1" and "i+1". It can be implemented in a straightforward way through simple modifications of the RF pulse schemes commonly employed in protein NMR studies. The efficacy of the approach is demonstrated using a uniformly ((15) N,(13) C) labelled sample of α-synuclein. The different possibilities for obtaining the amino-acid-type information, simultaneously with the connectivity data between the backbone resonances of sequentially neighbouring residues, have also been outlined.
- Subjects :
- 010405 organic chemistry
Chemistry
Relaxation (NMR)
Resonance
010402 general chemistry
Intrinsically disordered proteins
01 natural sciences
Atomic and Molecular Physics, and Optics
0104 chemical sciences
NMR spectra database
Magnetization
Crystallography
chemistry.chemical_compound
Heteronuclear molecule
Amide
alpha-Synuclein
Physical and Theoretical Chemistry
Nuclear Magnetic Resonance, Biomolecular
Mixing (physics)
Subjects
Details
- ISSN :
- 14397641
- Volume :
- 17
- Issue :
- 13
- Database :
- OpenAIRE
- Journal :
- Chemphyschem : a European journal of chemical physics and physical chemistry
- Accession number :
- edsair.doi.dedup.....38425057ea9de356257d43c01193bd98